1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgtgtttttgaactcccttttttccttgtccggtctaatttattggagatgcaaaattcataatgtttgtttttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAACATGTTCTTCCTTTGTTAAAGAAGTATGGAATGGTTCATCTTTTCGGAT
species | Arabidopsis thaliana |
transcript | AT1G29200.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG GTTACTGATACGGAGTTTGTAAAAGAGGCAACACCAGTCGATTACATCGAAEST: gi|116409041|gb|EG451633.1|EG451633
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAAEST: gi|116409042|gb|EG451634.1|EG451634
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAAEST: gi|116408977|gb|EG451569.1|EG451569
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAAEST: gi|116408966|gb|EG451558.1|EG451558
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAAEST: gi|116408964|gb|EG451556.1|EG451556
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG GTTACTGATACGGAGCCTGTAAAAGAGGCAACACCAGTCGATTACATCGAAEST: gi|116408807|gb|EG451399.1|EG451399
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAAEST: gi|116409036|gb|EG451628.1|EG451628
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAAEST: gi|116409002|gb|EG451594.1|EG451594
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG GTTACTGATACGGAGTTTGTAAAAGAGGCAACACCAGTCGATTACATCGAAEST: gi|116409038|gb|EG451630.1|EG451630
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAAEST: gi|116409043|gb|EG451635.1|EG451635
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAAEST: gi|116408965|gb|EG451557.1|EG451557
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG GTTACTGATACGGAGTTTGTAAAAGAGGCAACACCAGTCGATTACATCGAAEST: gi|116408817|gb|EG451409.1|EG451409
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAAEST: gi|116408815|gb|EG451407.1|EG451407
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
EST: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG GTTACTGATACGGAGCTTGTAAAAGAG-CAACACCAEST: gi|116409037|gb|EG451629.1|EG451629
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCA
EST: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTG GTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
genomic: AGAATCTTCCTCAACATCTAAAATCTACTGATAACAAGAATCTCAGCTTGgtgtgttttt ... ttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAA
gtccggtctaatttattggagatgcaaaattcataatgtttgtttttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAACATGTTCTTCCTTTGTTAAAGAAGTATGGAATGGTTCATCTTTTCGGAT
gtctaat putative branch site (score: 3)
tttgtttttct putative PPT
aaaattcataatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtttttgaactcccttttttccttgtccggtctaatttattggagatgcaaaattcataatgtttgtttttctacatagGTTACTGATACGGAGCTTGTAAAAGAGGCAACACCAGTCGATTACATCGAACATGTTCTTCCTTTGTTAAAGAAGTATGGAATGGTTCATCTTTTCGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT