1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgagtattttgttcttttttggcttttgtatcttaggtactcaacggttcattcaggtaacaaggttgtttaaaatgttgtagATAAGCCACCTATAGAAGAGTTGCATCAGTTTCTTGAGTTTCAACTTCCACGCCAATGGGCTCCAGTGTATGGAGATCTCCCTCTTGGACTACGCCGCTC
species | Arabidopsis thaliana |
transcript | AT1G28380.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCTCCCAGGAACAGGATTTCTTAGTCATGCAGTGAACTTATACCTCCGAT ATAAGCCACCTATAGAAGAGTTGCATCAGTTTCTTGAGTTTCAACTTCCACEST: gi|301502602|gb|HO208142.1|HO208142
genomic: TCTCCCAGGAACAGGATTTCTTAGTCATGCAGTGAACTTATACCTCCGATgtgagtattt ... aatgttgtagATAAGCCACCTATAGAAGAGTTGCATCAGTTTCTTGAGTTTCAACTTCCAC
EST: TCTCCCAGGAACAGGATTTCTTAGTCATGCAGTGAACTTATACCTCCGAT ATAAGCCACCTATAGAAGAGTTGCATCAGTTTCTTGAGTTTCAACTTCCAC
genomic: TCTCCCAGGAACAGGATTTCTTAGTCATGCAGTGAACTTATACCTCCGATgtgagtattt ... aatgttgtagATAAGCCACCTATAGAAGAGTTGCATCAGTTTCTTGAGTTTCAACTTCCAC
tatcttaggtactcaacggttcattcaggtaacaaggttgtttaaaatgttgtagATAAGCCACCTATAGAAGAGTTGCATCAGTTTCTTGAGTTTCAACTTCCACGCCAATGGGCTCCAGTGTATGGAGATCTCCCTCTTGGACTACGCCGCTC
aggtaac putative branch site (score: 3)
ttgtttaaaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtattttgttcttttttggcttttgtatcttaggtactcaacggttcattcaggtaacaaggttgtttaaaatgttgtagATAAGCCACCTATAGAAGAGTTGCATCAGTTTCTTGAGTTTCAACTTCCACGCCAATGGGCTCCAGTGTATGGAGATCTCCCTCTTGGACTACGCCGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC