Sequence
atgc intronic sequence ATGC exonic sequencegtaataatatagttgtctttgtcatgtttcttcctagccacagttgagtagtctttactgttttgcctcactaacgtcatattttaaacagACAGAGGTTGACTCAGCCAAGTTCATCATGAAAACGGATGATGACGCCTTTGTTCGTGTAGATGAAGTGTTACTTTCTTTATCAATGACCAACAACACTC
Basic information
species | Arabidopsis thaliana |
transcript | AT1G26810.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G26810.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv01s0026g02530.t01 (Vitis vinifera), 3'ss of exon 4
gtaataatatagttgtctttgtcatgtttcttcctagccacagttgagtagtctttactgttttgcctcactaacgtcatattttaaacagACAGAGGTTGACTCAGCCAAGTTCATCATGAAAACGGATGATGACGCCTTTGTTCGTGTAGATGAAGTGTTACTTTCTTTATCAATGACCAACAACACTC
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--------------------gtaaagtcttgtctcttgcttaaatgaggactatcc-ttcctttgcctcattgacctcatctcttaa-cagACGGAGGTTGTTTCGGCAAAGTTTGTCATGAAGACAGATGATGATGCATTTGTTCGTGTGGATGAAGTGTTAGCTTCTTTAAACAGGATAAATGTGTCACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124878035|gb|EH957472.1|EH957472EST: ATTATTACAGTCTCATCAGTTGGAAAACACTAGCCATCTGCATCTTCGGG ACAGAGGTTGACTCAGCCAAGTTCATC
genomic: ATTATTACAGTCTCATCAGTTGGAAAACACTAGCCATCTGCATCTTCGGGgtaataatat ... ttttaaacagACAGAGGTTGACTCAGCCAAGTTCATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gccacagttgagtagtctttactgttttgcctcactaacgtcatattttaaacagACAGAGGTTGACTCAGCCAAGTTCATCATGAAAACGGATGATGACGCCTTTGTTCGTGTAGATGAAGTGTTACTTTCTTTATCAATGACCAACAACACTC
cactaac putative branch site (score: 1)
tcatattttaaaca TA-rich tract