Sequence
atgc intronic sequence ATGC exonic sequencegtaggtgctggttaaggtcccatatgacattgctcatgagcaaaacttctttctgtatatgttccatcttataaacgattggtaaatgttttcagCTACATGGCTCCGGAATATGCATCAAGTGGCAAATTAACCGAGAAATCAGACGTATTCTCCTTTGGGGTTGTTCTACTGGAGTTAATCACTGGACGTAAG
Basic information
| species | Arabidopsis thaliana |
| transcript | AT1G26150.1 |
| intron # | 5 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G26150.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os05g01040.1 (Oryza sativa), 3'ss of exon 5
gtaggtgctggttaaggtcccatatgacattgctcatgagcaaaact-tctttctgtatatgttccatcttataaacgattggtaaatgttttcagCTACATGGCTCCGGAATATGCATCAAGTGGCAAATTAACCGAGAAATCAGACGTATTCTCCTTTGGGGTTGTTCTACTGGAGTTAATCACTGGACGTAAG
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------gttagtgaagtac-----tggcaattttcagaagcagatctgtcgtgatcttacagagataattaataaa--attcgtttttccttgcagGTACATGGCTCCAGAGTATGCATCAAGTGGGAAATTGACTGAGAGATCTGATGTGTTCTCTTTTGGTGTTGTTCTCTTAGAGCTTATCACTGGTAGAAAA
upper sequence: AT1G26150.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G458548_T01 (Zea mays), 3'ss of exon 7
gtaggtgctggttaaggtcccatatgacattgctcatgagcaaaacttctttctgtatatgttccatcttataaacgattggtaaatgttttcagCTACATGGCTCCGGAATATGCATCAAGTGGCAAATTAACCGAGAAATCAGACGTATTCTCCTTTGGGGTTGTTCTACTGGAGTTAATCACTGGACGTAAG
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gtgggtgatgagcc--gtcatatctcacaaagtacatcaatatatgacataaccatacggaattcatg--gtagacatcttgtt--tcttttcagGTACATGGCTCCAGAGTATGCATCGAGTGGCAAACTGACTGAGAGATCAGATGTGTTCTCTTTTGGTGTAGTTTTGTTAGAGCTTATTACTGGCCGGAAA
upper sequence: AT1G26150.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G355636_T01 (Zea mays), 3'ss of exon 6
gtaggtgctggttaaggtcccatatgacattgctcatgagcaaaacttctttctgtatatgttccatcttataaacgattggtaaatgttttcagCTACATGGCTCCGGAATATGCATCAAGTGGCAAATTAACCGAGAAATCAGACGTATTCTCCTTTGGGGTTGTTCTACTGGAGTTAATCACTGGACGTAAG
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------gttagtaaagcagcgacaagtccaagagagcagttaaaacatgcttgta----------atctgacgcatgtttcttaa------ttagGTACCTTGCTCCGGAGTATGCCTCAAGTGGCAAGCTGACCGAGAGATCTGATGTATTCTCATTTGGTGTTGTTCTCTTGGAGCTTATTACTGGTAGAAAG
upper sequence: AT1G26150.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv01s0011g02460.t01 (Vitis vinifera), 3'ss of exon 5
gtaggtgctggttaaggtcccatatgacattgctca---tgagcaaaacttctttc-tgtatatgttccatcttataaacgattggtaaat--gttttcagCTACATGGCTCCGGAATATGCATCAAGTGGCAAATTAACCGAGAAATCAGACGTATTCTCCTTTGGGGTTGTTCTACTGGAGTTAATCACTGGACGTAAG
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-cagagggcacttactatttagggatgaattgtccagaatgactaagatttgttttacatgccatatccatgttcaaagattccaattgattgaatttcagATATATGGCTCCCGAGTATGCATCAAGTGGCAAGTTAACTGAGAAATCTGATGTCTTCTCTTTTGGAGTTGTCCTTCTGGAGCTTATTACTGGACGGAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|47832052|gb|CK121736.1|CK121736EST: GCTCTCGACTGTAACACACATATTACAACTCGGGTCATGGGAACATTCGG CTACATGGCTCCGGAATATGCATCAAGTGGCAAATTAACCGAGAAATCAGA
genomic: GCTCTCGACTGTAACACACATATTACAACTCGGGTCATGGGAACATTCGGgtaggtgctg ... atgttttcagCTACATGGCTCCGGAATATGCATCAAGTGGCAAATTAACCGAGAAATCAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaaacttctttctgtatatgttccatcttataaacgattggtaaatgttttcagCTACATGGCTCCGGAATATGCATCAAGTGGCAAATTAACCGAGAAATCAGACGTATTCTCCTTTGGGGTTGTTCTACTGGAGTTAATCACTGGACGTAAG
tgttttc CT-rich tract
atcttataaa TA-rich tract
