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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatttacataccaaagttttccgtttgggtcccctcttgcattcttcagtcatctctatctcaattactctttaatgtatctctgattcaatgctttaatattgcagGGATTGCAGTTCTTGTAGCGGCAGTTTTCTTTGGCTATATGCTGGCCTTGTTGCAACGTAGACTCAGTTCTATCGTTTCATATCATACT

Basic information

species Arabidopsis thaliana
transcript AT1G23880.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125211422|gb|EL226376.1|EL226376
EST:     GTGCTGATCAGTATGGAAGTGGCTTTCCTCTGG                         GGATTGCAGTTCTTGTAGCGGCAGTTTTCTTTGGCTATATGCTGGCCTTGT
genomic: GTGCTGATCAGTATGGAAGTGGCTTTCCTCTGGgtaatattta ... aatattgcagGGATTGCAGTTCTTGTAGCGGCAGTTTTCTTTGGCTATATGCTGGCCTTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctatctcaattactctttaatgtatctctgattcaatgctttaatattgcagGGATTGCAGTTCTTGTAGCGGCAGTTTTCTTTGGCTATATGCTGGCCTTGTTGCAACGTAGACTCAGTTCTATCGTTTCATATCATACT
                                         ctttaat  putative branch site (score: 4)
          aattactctttaat  TA-rich tract