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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtctaacaaaaatgaatttcaaaatcactctcattaaccttacataaacataccaaaattttgttataaaacaactaactaacataagcttttgtctctggaaacttgcagACAAAGCACTCTAATGTTGGTGCGGCCCTTGAATATCCAATTACAGTCCTCAAC

Basic information

species Arabidopsis thaliana
transcript AT1G23730.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116425150|gb|EG467742.1|EG467742
EST:     AAGCCTTCATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGACAAG                         ACAAAGCACTTTAATGTTGGTGCGGCCCTTGAATATCCAATTACAGTCCTC
genomic: AAGCCTTCATCGTTAGAAACATTGCAAACATGGTGCCACCTTATGACAAGgttcgtctaa ... aaacttgcagACAAAGCACTCTAATGTTGGTGCGGCCCTTGAATATCCAATTACAGTCCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttgttataaaacaactaactaacataagcttttgtctctggaaacttgcagACAAAGCACTCTAATGTTGGTGCGGCCCTTGAATATCCAATTACAGTCCTCAAC
                    aactaac  putative branch site (score: 1)
       ttataaaacaactaa  TA-rich tract