1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgattgttttcatctgcacaatgaaatagatttttgttgtagaaacaaacccagcttaggctttttggttctttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAAATCTTGAATTGTGTTATACGCGGTAATGGAGATGGG
species | Arabidopsis thaliana |
transcript | AT1G23310.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCNNNNGTGTGATGCAEST: gi|86074113|gb|DR369870.1|DR369870
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCA
EST: TTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTAATCCAAG TGACCCAGAACTCATCEST: gi|116482909|gb|EG525501.1|EG525501
genomic: TTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTA-TCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATC
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAEST: gi|124887966|gb|EH966868.1|EH966868
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCA
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCACTGAEST: gi|124981343|gb|EL054218.1|EL054218
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGA
EST: GTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGEST: gi|86074105|gb|DR369862.1|DR369862
genomic: GTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAG
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGNGTGATGCAEST: gi|116434550|gb|EG477142.1|EG477142
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCA
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAEST: gi|86074145|gb|DR369902.1|DR369902
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCA
EST: TTAGGAAAAAGGTTGCTGAGTTCATTCAACGGCGTGATGGGGTATC-AAG TGACCCAGAACTCATCTTTCTCAACTGATGGAEST: gi|125298419|gb|EL312504.1|EL312504
genomic: TTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGG-TATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCA-CTGATGGA
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCACACTGATGGAGCTAGCAAAGGTGTEST: gi|124949349|gb|EL024966.1|EL024966
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGT
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTEST: gi|116434562|gb|EG477154.1|EG477154
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTT
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAEST: gi|125081352|gb|EL142607.1|EL142607
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCA
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTEST: gi|124981356|gb|EL054230.1|EL054230
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTT
EST: TTAGGTAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTEST: gi|125202088|gb|EL217042.1|EL217042
genomic: TTAGG-AAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTT
EST: AACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTAGATGCEST: gi|116482910|gb|EG525502.1|EG525502
genomic: AACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGT-GATGC
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAEST: gi|116400460|gb|EG443052.1|EG443052
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCA
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAEST: gi|86074107|gb|DR369864.1|DR369864
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCA
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCCCTGATGGAGCTAGCAAAGGTGTGATGCAEST: gi|86074110|gb|DR369867.1|DR369867
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCA
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAEST: gi|86074144|gb|DR369901.1|DR369901
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCA
EST: TTAGGAAAGAGGTTGCTGAGTTTCATTCAACGGCGTGATGGGTATC-AAG TGGACC-AGA-CTCATCTT-CTCACTGATGGAGCTAGCAEST: gi|86074123|gb|DR369880.1|DR369880
genomic: TTAGGAAAGAGGTTGCTGAGTT-CATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTG-ACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCA
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAEST: gi|86074134|gb|DR369891.1|DR369891
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCA
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAEST: gi|86074106|gb|DR369863.1|DR369863
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCA
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCNNNGGTGTGATGCAEST: gi|125127001|gb|EL172068.1|EL172068
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCA
EST: TTCATTCAACGGCGTGATGGGTATCCAAG TGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAEST: gi|152038525|gb|AV826916.2|AV826916
genomic: TTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCA
EST: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAG TAACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCA
genomic: GTTAGGAAAGAGGTTGCTGAGTTCATTCAACGGCGTGATGGGTATCCAAGgtgattgttt ... ttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCA
agatttttgttgtagaaacaaacccagcttaggctttttggttctttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAAATCTTGAATTGTGTTATACGCGGTAATGGAGATGGG
ctttttggttcttt CT-rich tract
ttctttattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattgttttcatctgcacaatgaaatagatttttgttgtagaaacaaacccagcttaggctttttggttctttatttttagTGACCCAGAACTCATCTTTCTCACTGATGGAGCTAGCAAAGGTGTGATGCAAATCTTGAATTGTGTTATACGCGGTAATGGAGATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG