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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcacgatttgttgtttttgggttttgatttttacttgcttcactctagttctgaggttttcatgatagttttgattctttttttacagGCTATTGAAACCGAGTTGATGGAACGTTTGAAGAAAGGCATTTACCCTACTGAAATATACAATTTATCTGACAGTGTGTTTAACAAACTGCTTGATAGAG

Basic information

species Arabidopsis thaliana
transcript AT1G23280.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125316568|gb|EL330653.1|EL330653
EST:     GGGAGTCGAGAAGAGAGGAAAAGGCTATAAAAGCAGCTCAGTTGGATAAG                         GCTATTGAAACCGAGTTGATGGAACGTTTGAAGAAAGGCATTTACCCTACT
genomic: GGGAGTCGAGAAGAGAGGAAAAGGCTATAAAAGCAGCTCAGTTGGATAAGgtcacgattt ... ttttttacagGCTATTGAAACCGAGTTGATGGAACGTTTGAAGAAAGGCATTTACCCTACT
EST: gi|164049814|gb|ES143987.1|ES143987
EST:     CGAGAAGAGAGGAAAAGGCTATAAAAGCAGCTCAGTTGGATAAG                         GCTATTGAAACCGAGTTGATGGAACGTTTGAA
genomic: CGAGAAGAGAGGAAAAGGCTATAAAAGCAGCTCAGTTGGATAAGgtcacgattt ... ttttttacagGCTATTGAAACCGAGTTGATGGAACGTTTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcttcactctagttctgaggttttcatgatagttttgattctttttttacagGCTATTGAAACCGAGTTGATGGAACGTTTGAAGAAAGGCATTTACCCTACTGAAATATACAATTTATCTGACAGTGTGTTTAACAAACTGCTTGATAGAG
                                   ttttgat  putative branch site (score: 4)
                                   ttttgattcttttttt  CT-rich tract
                               atagttttgattcttt  TA-rich tract