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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggaatactgagcttcatgtggtttgattatttcttgtgacaaactttacctccttgcttgttacacttatatcttgaacttgaactttcacctgcagGATCTAGTTTTTTCCGAAGCGACACTAGGTTGCGTGCCCTCCGTTTCCTTGATCATATGCTT

Basic information

species Arabidopsis thaliana
transcript AT1G22870.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G22870.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA09G00470.1 (Glycine max), 3'ss of exon 5
gtaggaatactgagcttcatg-tggtttgattatttcttgtgacaaactttacctccttgcttgttacacttatatcttgaacttgaactttca--cctgcagGATCTAGTTTTTTCCGAAGCGACACTAGGTTGCGTGCCCTCCGTTTCCTTGATCATATGCTT
     |  | ||| | |     |   |  | | | |||  ||      |  | || || | | || | | |  |  |  ||  |     | |||    |||||| ||    |||||  |    ||||||||||||||||| || || ||||||||||| ||||||
--gttaccattgaacattgcaattaatatagtgtctctgctggttg-ttggagcttctagatggtcaaaatcttgacaggatatatgcttctcatatttgcagGCTCACCATTTTTTAGGCATGACACTAGGTTGCGTGCTCTACGCTTCCTTGATCACATGCTT

upper sequence: AT1G22870.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA12G37070.1 (Glycine max), 3'ss of exon 5
gtaggaatactgagcttcatg-tggtttgattatttcttgtgacaaactttacctccttgcttgttacacttatatcttgaacttgaactttca--cctgcagGATCTAGTTTTTTCCGAAGCGACACTAGGTTGCGTGCCCTCCGTTTCCTTGATCATATGCTT
     |  | ||| | |     |   |  | | | |||  ||  |   |  | ||  | | | || | | |  |  |   |  |     | |||    |||||| ||    |||||  |    ||||||||||||||||| || || ||||||||||| ||||||
--gttaccattgaacattgcaattaatatagtgtctctgctggtag-ttggagcttttagatggtcataatcttgacagtatatatgcttctcatatttgcagGCTCACCATTTTTTAGGCATGACACTAGGTTGCGTGCTCTACGCTTCCTTGATCACATGCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actttacctccttgcttgttacacttatatcttgaacttgaactttcacctgcagGATCTAGTTTTTTCCGAAGCGACACTAGGTTGCGTGCCCTCCGTTTCCTTGATCATATGCTT
                                          ctttcacct  CT-rich tract
                        ttatatctt  TA-rich tract