1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacgttttctaagcttagttagccaaagttgtgtgtattaagtcaattgtttcaagcgttttattaacctgtgggtgttataataatgcagGAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAGAAGAACATGAAAGCCTACAACAAGAAATTGGTAATT
species | Arabidopsis thaliana |
transcript | AT1G20696.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCT GAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGEST: gi|164206132|gb|EL980938.1|EL980938
genomic: GTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCTgtacgttttc ... aataatgcagGAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCG
EST: GTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCT GAGAAGGCTCCTTATGTGGEST: gi|301502423|gb|HO207963.1|HO207963
genomic: GTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCTgtacgttttc ... aataatgcagGAGAAGGCTCCTTATGTGG
EST: GTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCT GAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAGEST: gi|125226245|gb|EL240330.1|EL240330
genomic: GTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCTgtacgttttc ... aataatgcagGAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAG
EST: TGGAAATCCTTGTCTGACTCT GAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAGEST: gi|164017044|gb|ES140330.1|ES140330
genomic: TGGAAATCCTTGTCTGACTCTgtacgttttc ... aataatgcagGAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAG
EST: CTGTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCT GAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAGEST: gi|164132569|gb|ES000124.1|ES000124
genomic: CTGTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCTgtacgttttc ... aataatgcagGAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAG
EST: GTTGGCAAAGCTGGTGGTGAAAAGTGGAA-TCCTTGTCTGACTCT GAGAAGGCTCCTTATGTGGCTAAGGCEST: gi|164235543|gb|ES101910.1|ES101910
genomic: GTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCTgtacgttttc ... aataatgcagGAGAAGGCTCCTTATGTGGCTAAGGC
EST: CTGCTGTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCT GAGAAGGCTCCEST: gi|164215576|gb|ES095481.1|ES095481
genomic: CTGCTGTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCTgtacgttttc ... aataatgcagGAGAAGGCTCC
EST: GTGGAAATCCTTGTCTGACTCT GAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTAATGAEST: gi|124889979|gb|EH968881.1|EH968881
genomic: GTGGAAATCCTTGTCTGACTCTgtacgttttc ... aataatgcagGAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTA-TGA
EST: CTGCTGTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCT GAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAG
genomic: CTGCTGTTGGCAAAGCTGGTGGTGAAAAGTGGAAATCCTTGTCTGACTCTgtacgttttc ... aataatgcagGAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAG
attaagtcaattgtttcaagcgttttattaacctgtgggtgttataataatgcagGAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAGAAGAACATGAAAGCCTACAACAAGAAATTGGTAATT
tattaac putative branch site (score: 1)
tgttataataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgttttctaagcttagttagccaaagttgtgtgtattaagtcaattgtttcaagcgttttattaacctgtgggtgttataataatgcagGAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTTGAGTATGAGAAGAACATGAAAGCCTACAACAAGAAATTGGTAATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA