1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatatctttgattggaaaaacgaaactcttgtttcagttcctccttttaaaatatgatctgtggctttacaaatgatcaagcatttgtgactagATGGTCAGGAATTCTAAATCAGAGCTTCGACAGCTTCTGGAGTCTGGTAACATAGATCTTTGCTTTGCTAACGAGGACGAAGCAGCAGAGCTCCTTAG
species | Arabidopsis thaliana |
transcript | AT1G19600.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAGCAAGAAGGTCTTTCTGTTTCCTTGGATTTAGCTAGTTTTGAG ATGGTCAGGAATTCTAAATCAGAGCTTCGACAGCTTCTGGAGTCTGGTAACEST: gi|124998527|gb|EL070796.1|EL070796
genomic: CAAGCAAGAAGGTCTTTCTGTTTCCTTGGATTTAGCTAGTTTTGAGgtatatcttt ... ttgtgactagATGGTCAGGAATTCTAAATCAGAGCTTCGACAGCTTCTGGAGTCTGGTAAC
EST: TTGCCAAGCAAGAAGGTCTTTCTGTTTCCTTGGATTTAGCTAGTTTTGAG ATGGTCAGGAATTCTAAATCAGAGCTTCGACAGCT
genomic: TTGCCAAGCAAGAAGGTCTTTCTGTTTCCTTGGATTTAGCTAGTTTTGAGgtatatcttt ... ttgtgactagATGGTCAGGAATTCTAAATCAGAGCTTCGACAGCT
cctccttttaaaatatgatctgtggctttacaaatgatcaagcatttgtgactagATGGTCAGGAATTCTAAATCAGAGCTTCGACAGCTTCTGGAGTCTGGTAACATAGATCTTTGCTTTGCTAACGAGGACGAAGCAGCAGAGCTCCTTAG
ttttaaaatatgatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatatctttgattggaaaaacgaaactcttgtttcagttcctccttttaaaatatgatctgtggctttacaaatgatcaagcatttgtgactagATGGTCAGGAATTCTAAATCAGAGCTTCGACAGCTTCTGGAGTCTGGTAACATAGATCTTTGCTTTGCTAACGAGGACGAAGCAGCAGAGCTCCTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT