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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattctttttcaccaaacccaactactcttgctatttctccctaccaggaaaatgcttctagttttctattttgtagaatattgttgtgtggttctatagtgttgttgagaagaccagccatctcaagctaagtctactcttgttatatttcagTATACCCCTGCGATTGATATCTGGAGTGTCGGTTGCATTTTTGCGGAAATGCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCACCAATTGG

Basic information

species Arabidopsis thaliana
transcript AT1G18150.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G18150.3 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G375975_T01 (Zea mays), 3'ss of exon 3
gtaagattctttttcaccaaacccaactactcttgctatttctccctaccaggaaaatgcttctagttttctattttgtagaatattgttgtgtggttctatagtgttgttgagaagaccagccatctcaagctaagtctact-cttg-----ttatatttcagTATACCCCTGCGATTGATATCTGGAGTGTCGGTTGCATTTTTGCGGAAATGCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCACCAATTGG
                                  | || || ||   ||| ||| |   ||||||     |||  |  |     |||| | | ||||| | || ||||   ||| | |||| |    |   ||| | | |||  |||      | || || |||||||| ||||||||||||||||||||  | ||||| || ||||| ||||||||| | || |||||| | ||||| || || || || || || ||| |||
------------------------------gtcggatagttttc---acccggacacaacttcta-----ctagctctt----cattgctatatggttttttactgtttaagagtacacca-cttcattttgctgaatttacaacttaacacttaattttgcagTATACTCCTGCGATTGATATCTGGAGCCTAGGTTGTATATTTGCTGAAATGCTTATAGGGAAGCCTCTCTTTCCTGGCAAGAATGTGGTACATCAACTGG

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA05G33980.1 (Glycine max), 3'ss of exon 4
gtaagattctttttcaccaaacccaactactcttgctatttctccctaccaggaaaatgcttctagttttctattttgtagaatattgttgtgtggttctatagtgttgttgagaagaccagccatctcaagctaagtctactcttgttatatttcagTATACCCCTGCGATTGATATCTGGAGTGTCGGTTGCATTTTTGCGGAAATGCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCACCAATTGG
                                 |    ||  |  ||   |  | | |   |   ||| | |||  | ||    ||||     || ||  |||    | ||||    |  |  |||   |   ||| | || |    ||   || ||||| |||||||| |||||||| |||||  | || ||||| ||||| ||||||||    || ||||| |||||||| |||||||| ||||||||||||||||
--------------------------------gtaagcttcttttcttttaacatattttcttgggttctatataatataagcaattga-acatgcttg-ata----tattga----attatgcatgcaattttaaatttatttccttt---ttgcagTACACCCCTGCAATTGATATTTGGAGCATTGGGTGCATATTTGCAGAAATGCTCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTTGTGCACCAATTGG

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA08G05700.1 (Glycine max), 3'ss of exon 4
gtaagattctttttcaccaaacccaactactcttgctatttctccctaccaggaaaatgcttctagttttctattttgtagaatattgtt-gtgtggttctatagtgttgttg-agaagaccagccatctcaagctaagtctactcttgttatatttcagTATACCCCTGCGATTGATATCTGGAGTGTCGGTTGCATTTTTGCGGAAATGCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCACCAATTGG
                                  |  | ||    ||          |  ||    | || | ||  || ||||||  ||   |   ||  | |   ||| || |    |  |  ||| | |   ||| | || |    ||   || ||||| || || || |||||||| |||||  | || ||||| ||||| ||||||||    || ||||| |||||||| |||||||| ||||||||||||||||
----------------------------------gtaagtttcttcttt--------tttttaacatcttttcttgggttgaatataatttaagcaattgaacatacttggtgtattgaaatatgcatgtaattttaaatttatttccttt---ttgcagTACACTCCAGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTTGTGCACCAATTGG

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA09G30790.1 (Glycine max), 3'ss of exon 4
gtaagattctttttcaccaaacccaactactcttgctatttctccctaccaggaaaatgcttctagttttctattttgtagaatattgttgtgtggttctatagtgttgttgagaagaccagccatctcaagctaagtctactcttgttatatttcagTATACCCCTGCGATTGATATCTGGAGTGTCGGTTGCATTTTTGCGGAAATGCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCACCAATTGG
                             |   | | ||    | ||||| |||   ||       |  | |||   || ||||||  ||  ||  | |  ||||||              |  || ||||         |  |||||  | || |||||||| ||||| |||||||| |||||  | || ||||| ||||| ||||||||    || ||||| |||||||| || ||||| || |||||||||||||
-----------------------------cctcttcaatcctcctctaccgggattgtgt-----atgatttatgaagttgaatatatttaagtattgcactagtgt--------------gtaatttcaa---------atccttgtctt-ttgcagTATACGCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCAGTGGGAAGCCATTGTTTCCTGGAAAAAATGTAGTGCACCAATTGG

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv17s0000g02570.t01 (Vitis vinifera), 3'ss of exon 4
gtaagattctttttcaccaaacccaactactcttgctatttctccctaccaggaaaatgcttctagttttctattttgtagaatattgttgtgtggttctatagtgttgttgagaagaccagccatctcaagctaagtctactcttgttatatttcagTATACCCCTGCGATTGATATCTGGAGTGTCGGTTGCATTTTTGCGGAAATGCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCACCAATTGG
                                             ||       ||||    |    | | |  ||| || ||| |    |||  ||| | |  | ||       | | ||    ||| ||         ||  |    || |||||||| || |||||||||||||| |||||  | || ||||| ||||| |||||||||   || || ||  ||||||| |||||||| || |||||||| ||||
---------------------------------------------cttttgatgaaatatgacc---tctttggtttataaaatttaa--gtggagttatgttttattaaactatatatcaaatttcttaaa--------accttctccatttttcagTACACTCCTGCGATTGATATTTGGAGCATAGGATGCATATTTGCAGAAATGCTTACAGGAAAACCGCTGTTTCCGGGGAAAAATGTAGTGCACCAGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgttgttgagaagaccagccatctcaagctaagtctactcttgttatatttcagTATACCCCTGCGATTGATATCTGGAGTGTCGGTTGCATTTTTGCGGAAATGCTTTTGGGTAAGCCTTTGTTTCCCGGGAAAAACGTTGTGCACCAATTGG
                                      ctcttgtt  CT-rich tract
                                         ttgttatattt  TA-rich tract