1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttgattctccttttcctaaacatccacaagattattctttattttgcttgttggcttgatataacctatccttagttctcctcataaccttttttgggttcttatgttttgcttttctagtcattcatgtctcaatatggttttctagaaatctctgtttctcaaatgcagGTGCCTATCTCTTTGTCAATACGGGTGTCTTCTCTTCGAGGGACACTGCGGGTACACATGAAGCCGCCTCCTTCTGATCAATTATGGTTTGGATTCACGA
species | Arabidopsis thaliana |
transcript | AT1G17820.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAACAAGTTTCTCAG GTGCCTATCTCTTTGTCAATACGGGTGTCTTCTCTTTCGAGGGACACTGCGEST: gi|164207260|gb|ES173190.1|ES173190
genomic: GAACAAGTTTCTCAGgttgattctc ... tcaaatgcagGTGCCTATCTCTTTGTCAATACGGGTGTCTTCTC-TTCGAGGGACACTGCG
EST: GAACAAGTTTCTCAG GTGCCTATCTCTTTGTCAATACGGGTGTCTTCTCTTCGAGGGACACTGCGGEST: gi|125211760|gb|EL226714.1|EL226714
genomic: GAACAAGTTTCTCAGgttgattctc ... tcaaatgcagGTGCCTATCTCTTTGTCAATACGGGTGTCTTCTCTTCGAGGGACACTGCGG
EST: TATCCAGGTGGAAGTCTATTCTTAAAACAATTGCTGAACAAGTTTCTCAG GTGCCTATCTCTTTGTCAATACGGGTGTCTTCTCTTCGAGGGACACT
genomic: TATCCAGGTGGAAGTCTATTCTTAAAACAATTGCTGAACAAGTTTCTCAGgttgattctc ... tcaaatgcagGTGCCTATCTCTTTGTCAATACGGGTGTCTTCTCTTCGAGGGACACT
ctagtcattcatgtctcaatatggttttctagaaatctctgtttctcaaatgcagGTGCCTATCTCTTTGTCAATACGGGTGTCTTCTCTTCGAGGGACACTGCGGGTACACATGAAGCCGCCTCCTTCTGATCAATTATGGTTTGGATTCACGA
tctctgtttctc CT-rich tract
tcaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgattctccttttcctaaacatccacaagattattctttattttgcttgttggcttgatataacctatccttagttctcctcataaccttttttgggttcttatgttttgcttttctagtcattcatgtctcaatatggttttctagaaatctctgtttctcaaatgcagGTGCCTATCTCTTTGTCAATACGGGTGTCTTCTCTTCGAGGGACACTGCGGGTACACATGAAGCCGCCTCCTTCTGATCAATTATGGTTTGGATTCACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC