Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattattaccttaatgctttgcatattacaaatatttctacttttgccacaaaggaactaactttatattgtactggggattgatgcagGCATATGAATCTTTAATGAAAGCTTTCACTGATCGGAATAAG

Basic information

species Arabidopsis thaliana
transcript AT1G15290.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15290.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 7
---------------------gttat-tattaccttaa--tgctttgcatattacaaatatttctacttttgccacaaaggaactaactttatattgtactggggattgatgcagGCATATGAATCTTTAATGAAAGCTTTCACTGATCGGAATAAG
                      |||| || | | || |  | || |  || | | |   ||   | | ||| |      | |||||| ||| | |  | ||| | ||  || |||||||||||||| ||||||||||||||    || |  ||||||
gtgggtgcttcgagcttttcctttatatactgctttgagatactcta-atttcatacgcatacttgcattt-ctgtggtgtaactaa-tttgtgtgatcctgtg-ataaattcagGCATATGAATCCTTAATGAAAGCTTTTGTAGAGCACAATAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctacttttgccacaaaggaactaactttatattgtactggggattgatgcagGCATATGAATCTTTAATGAAAGCTTTCACTGATCGGAATAAG
                     aactaactttatatt  TA-rich tract