1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatttgctgagattcacatgaacctcttgtctcatggattagcttgattcatgttcagttagatttttcattctttattcaatttattgtattctcacttctcactctttatttttgcagAAGTTCAGAAAAGAAGATAAGCAGCGTTCTGGAACAGATGCATACGCCCGACGAACTGCAGCTCTACAAAGG
species | Arabidopsis thaliana |
transcript | AT1G15200.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGTTAATAGGAACGAGAAGAATGCTAGGGAATCTTCTAGGGACTTTGGAG AAGTTCAGGAAAAGAAGATAAGCAGCGTTCTGGAACAGAEST: gi|164075982|gb|ES000383.1|ES000383
genomic: GGTTAATAGGAAC-AGAAGAATGCTAGGGAATCTTCTAGGGACTTTGGAGgtatttgctg ... atttttgcagAAGTTCAG-AAAAGAAGATAAGCAGCGTTCTGGAACAGA
EST: GGTTAATAGGAACGAGAAGAATGCTAGGGAATCTTCTAGGGACTTTGGAG AAGTTCAGAAA-GAAGATAAGCAGCGTTCTGGAACAGAEST: gi|164231585|gb|EL990841.1|EL990841
genomic: GGTTAATAGGAAC-AGAAGAATGCTAGGGAATCTTCTAGGGACTTTGGAGgtatttgctg ... atttttgcagAAGTTCAGAAAAGAAGATAAGCAGCGTTCTGGAACAGA
EST: GGTTAATAGGAACGAGAAGAATGCTAGGGAATCTTCTAGGGACTTTGGAG AAGTTCAGAAAAGAAGATAAGCAGCGTTCTGGAACAGAEST: gi|164049443|gb|ES005954.1|ES005954
genomic: GGTTAATAGGAAC-AGAAGAATGCTAGGGAATCTTCTAGGGACTTTGGAGgtatttgctg ... atttttgcagAAGTTCAGAAAAGAAGATAAGCAGCGTTCTGGAACAGA
EST: GGTTAATAGGAACGAGAAGAATGCTAGGGAATCTTCTAGGGACTTTGGAG AAGTTCAGAAAAGAAGATAAGCAGCGTTCTGGAAC
genomic: GGTTAATAGGAAC-AGAAGAATGCTAGGGAATCTTCTAGGGACTTTGGAGgtatttgctg ... atttttgcagAAGTTCAGAAAAGAAGATAAGCAGCGTTCTGGAAC
tttcattctttattcaatttattgtattctcacttctcactctttatttttgcagAAGTTCAGAAAAGAAGATAAGCAGCGTTCTGGAACAGATGCATACGCCCGACGAACTGCAGCTCTACAAAGG
ttctcac putative branch site (score: 2)
tattctcacttctcac CT-rich tract
ttctttattcaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttgctgagattcacatgaacctcttgtctcatggattagcttgattcatgttcagttagatttttcattctttattcaatttattgtattctcacttctcactctttatttttgcagAAGTTCAGAAAAGAAGATAAGCAGCGTTCTGGAACAGATGCATACGCCCGACGAACTGCAGCTCTACAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC