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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtttaaaaggagtttggcagattactctttaatgaacatgttgcttagtctataccctttgaacaatttaacatggattatgcttatcggctttcagGTTGCTGGGACTATTCGTAACTGTTGTTTTGAAGCCAAAAACCAACTCCAGAATATACTCTTGATATCAGAGTTTCTTTGGCCCGCTCTGCTCCTACCAG

Basic information

species Arabidopsis thaliana
transcript AT1G14300.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074197|gb|DR369954.1|DR369954
EST:     AACAGATCATTAGGCAGTTTGATTCAACAAATCAGTTGCGAAAGAAAGGG                         GTTGCTGGGACTATTCGTAACTGTTGTTT
genomic: AACAGATCATTAGGCAGTTTGATTCAACAAATCAATTGCGAAAGAAAGGGgtacgtttaa ... cggctttcagGTTGCTGGGACTATTCGTAACTGTTGTTT
EST: gi|47828406|gb|CK118090.1|CK118090
EST:     AACAGATCATTAGGCAGTTTGATTCAACAAATCAGTTGCGAAAGAAAGGG                         GTTGCTGGGACTATTCGTAACTGTTGTTTTGAAGCCAAAAACCAACTCCAG
genomic: AACAGATCATTAGGCAGTTTGATTCAACAAATCAATTGCGAAAGAAAGGGgtacgtttaa ... cggctttcagGTTGCTGGGACTATTCGTAACTGTTGTTTTGAAGCCAAAAACCAACTCCAG
EST: gi|125245045|gb|EL259130.1|EL259130
EST:     CAGATCATTAGGCAGTTTGATTCAACAAAATCAAATTGCGAAAGAAAGGG                         GTTGCTGGGACTATTCG
genomic: CAGATCATTAGGCAGTTTGATTCAACAAA-TCAA-TTGCGAAAGAAAGGGgtacgtttaa ... cggctttcagGTTGCTGGGACTATTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttagtctataccctttgaacaatttaacatggattatgcttatcggctttcagGTTGCTGGGACTATTCGTAACTGTTGTTTTGAAGCCAAAAACCAACTCCAGAATATACTCTTGATATCAGAGTTTCTTTGGCCCGCTCTGCTCCTACCAG
                       atttaac  putative branch site (score: 3)
                                                ctttc  putative PPT
               tttgaacaatttaa  TA-rich tract