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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttatttttcccatgttcctcctttgattatctgttttcagtttgtttctagatttttctgacatgtgttccaatattgcagGTTGTGACGCGCTTGCTTGTGCG

Basic information

species Arabidopsis thaliana
transcript AT1G13560.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86070080|gb|DR365837.1|DR365837
EST:     AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATG                         GTTGTGACGCGCTTGCTTGTGCG
genomic: AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATGgtgatttatt ... aatattgcagGTTGTGACGCGCTTGCTTGTGCG
EST: gi|86070077|gb|DR365834.1|DR365834
EST:     AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATG                         GTTGTGACGCGCTTGCTTGTGCG
genomic: AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATGgtgatttatt ... aatattgcagGTTGTGACGCGCTTGCTTGTGCG
EST: gi|86070078|gb|DR365835.1|DR365835
EST:     AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATG                         GTTGTGACGCGCTT
genomic: AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATGgtgatttatt ... aatattgcagGTTGTGACGCGCTT
EST: gi|86070081|gb|DR365838.1|DR365838
EST:     AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATG                         GTTGTGACGCGCTTGCTTGTGCG
genomic: AGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATGgtgatttatt ... aatattgcagGTTGTGACGCGCTTGCTTGTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatctgttttcagtttgtttctagatttttctgacatgtgttccaatattgcagGTTGTGACGCGCTTGCTTGTGCG
                             ttctgac  putative branch site (score: 2)
                      tagattttt  TA-rich tract