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gtttgcgtctctctttttcttcaaaagtttaactttctgttatatgtgctggtgaaggtgttttgaagtcttttttatcttacaccttttgagcttttattagACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATG
species | Arabidopsis thaliana |
transcript | AT1G13560.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAG ACATTTGATGCGNNNGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCEST: gi|163974523|gb|EL987272.1|EL987272
genomic: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGgtttgcgtct ... cttttattagACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
EST: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAG ACATTTGATGCGGTTGATGGGEST: gi|86070078|gb|DR365835.1|DR365835
genomic: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGgtttgcgtct ... cttttattagACATTTGATGCGGTTGATGGG
EST: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAG ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCEST: gi|86070080|gb|DR365837.1|DR365837
genomic: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGgtttgcgtct ... cttttattagACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
EST: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAG ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCEST: gi|86070077|gb|DR365834.1|DR365834
genomic: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGgtttgcgtct ... cttttattagACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
EST: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAG ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCEST: gi|86070082|gb|DR365839.1|DR365839
genomic: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGgtttgcgtct ... cttttattagACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
EST: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAG ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCEST: gi|86070081|gb|DR365838.1|DR365838
genomic: CTCCACGATGGGTTCACTTCGCACATGGTTTACTTCTCTTCTTGTATCAGgtttgcgtct ... cttttattagACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
EST: ATGGTTTACTTCTCTTCTTGTATCAG ACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
genomic: ATGGTTTACTTCTCTTCTTGTATCAGgtttgcgtct ... cttttattagACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGC
ctggtgaaggtgttttgaagtcttttttatcttacaccttttgagcttttattagACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATG
atcttac putative branch site (score: 3)
cttttatt putative PPT
tcttttttatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgcgtctctctttttcttcaaaagtttaactttctgttatatgtgctggtgaaggtgttttgaagtcttttttatcttacaccttttgagcttttattagACATTTGATGCGGTTGATGGGAAGCAAGCAAGAAGGACAAATTCCTCTAGCCCCCTAGGAGAGCTCTTCGATCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT