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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggttgttaccacgccattaagcaatagtatggatatcatgtgaactacatctgtgatcttatgtatctattttaatagATCATTCATGTTAATCTCACTCAAGACAACCCAAGGCCATTGGAAGCAGGGAAAAAAATGGACCTGACGTATTCTGTGCAATGGATTCCAACAAATGTCA

Basic information

species Arabidopsis thaliana
transcript AT1G10950.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G10950.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os12g07670.1 (Oryza sativa), 3'ss of exon 5
------------gtcggttgttaccacgccattaagcaatagtatggatatcatgtga-actacatctgtgatcttatgtatctattttaatagATCATTCATGTTAATCTCACTCAAGACAACCCAAGGCCATTGGAAGCAGGGAAAAAAATGGACCTGACGTATTCTGTGCAATGGATTCCAACAAATGTCA
                   || |  |  |  || |  |  |   ||  | | |  ||| |  | |  | |||||| || |   |||||||   ||||||||||||||||||||| |||||    || | ||   | ||||| || || ||| ||||| |||| ||||| ||| | ||| | | |||| |||| |
gtacgagttttgcataaaagtgataaaacttttcattaccacattgcttttgacatgataacataatt-tgatctcattttattatttta---gATCATTCATGTTAATCTCACCCAAGAGTCTCCTAAGCTTCTTGAAGCTGGTAAGAAATTGGACATGACATATTCAGTGAAGTGGTTACAAACAGATGTGA

upper sequence: AT1G10950.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA08G20100.1 (Glycine max), 3'ss of exon 5
gtcggttgttacc-acgccattaagcaatagtatggatatcatgtgaactacatc-tgtgatcttatgt---atctatttta--atagATCATTCATGTTAATCTCACTCAAGACAACCCAAGGCCATTGGAAGCAGGGAAAAAAATGGACCTGACGTATTCTGTGCAATGGATTCCAACAAATGTCA
||| |  ||||   | |    |  || |   ||||  | |  || ||   |     ||    |||| ||    || |||| |    ||||||||||||||||||| ||| | ||||||||||||||  |||||| ||| |||    ||||| |||| ||||||||  |||||  ||| || |||||||
gtcagaagttatttaagtatctttgctaccttatgc-tgttttgggattcatggagtgcatacttaggttaggtccatttcattgcagATCATTCATGTTAATCTAACTTATGACAACCCAAGGCCTCTGGAAGTAGGAAAATCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCA

upper sequence: AT1G10950.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA12G29120.1 (Glycine max), 3'ss of exon 5
gtcggttgttacc-acgccattaagcaatagtatggatatcatgtgaactacatc-tgtgatcttatgt---atctattttaat---agATCATTCATGTTAATCTCACTCAAGACAACCCAAGGCCATTGGAAGCAGGGAAAAAAATGGACCTGACGTATTCTGTGCAATGGATTCCAACAAATGTCA
||| |  ||||   | |    |  || ||  ||||  | |  || ||   | |   ||    |||| ||    || ||||| ||   ||||||||||||||||||| ||| | ||||||||||||||  |||||| ||| |||    ||||| |||| ||||||||  |||||  ||| || |||||||
gtcagaagttatttaagtatctttgctatcttatgc-tgttttgggattcatagagtgcatacttaggttaggtccatttttattgcagATCATTCATGTTAATCTAACTAATGACAACCCAAGGCCTCTGGAAGTAGGAAAACCTTTGGACATGACATATTCTGTCAAATGGTCTCCTACGAATGTCA

upper sequence: AT1G10950.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: Vv18s0041g00680.t01 (Vitis vinifera), 3'ss of exon 5
gtcggttgttaccacgcca-ttaagcaatagtatggatatcatgtgaactacatctgtgatcttatgtatctattttaatagATCATTCATGTTAATCTCACTCAAGACAACCCAAGGCCATTGGAAGCAGGGAAAAAAATGGACCTGACGTATTCTGTGCAATGGATTCCAACAAATGTCA
    |||| ||   |   | || |   | | ||   | |     |     || |   || |  || | |||| ||||   |||| |||||||||||||||||||||||||  || |  |||||||||| |||||||    ||||| |||| |||||||| ||||||||||||||| ||||  
----gttggtatttcataagtttaatcagaataacaaaacttcatc--tcacctggttgtttataagcatctgttttt-cagATTATTCATGTTAATCTCACTCAAGACAGTCCTAAACCATTGGAAGAAGGGAAAGCCTTGGACATGACATATTCTGTTCAATGGATTCCAACAGATGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagtatggatatcatgtgaactacatctgtgatcttatgtatctattttaatagATCATTCATGTTAATCTCACTCAAGACAACCCAAGGCCATTGGAAGCAGGGAAAAAAATGGACCTGACGTATTCTGTGCAATGGATTCCAACAAATGTCA
                                          tctatttt  CT-rich tract
                                atcttatgtatctatt  TA-rich tract