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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatctctgctgtttccaaattgcatatatactaggtttgagacaattctgatctcagtttcccatcatgtcattcttagGTAATGGTGCCAGAGGCTTTTGCAATCGTCGTAGCTCCAACTGATAGCTCTAA

Basic information

species Arabidopsis thaliana
transcript AT1G10600.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86086322|gb|DR382081.1|DR382081
EST:     CATGTCATCTGTAGATCTGCATACACATTA-TCTTATCAG                         GTAATGGTGCCAGAGGCTTTTGCAATCGTCGTAGCTCCAACTGATAGCTCT
genomic: CATGTCATCTGTAGATCTGCATACACATTATTCGTATCAGgtacatctct ... tcattcttagGTAATGGTGCCAGAGGCTTTTGCAATCGTCGTAGCTCCAACTGATAGCTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatactaggtttgagacaattctgatctcagtttcccatcatgtcattcttagGTAATGGTGCCAGAGGCTTTTGCAATCGTCGTAGCTCCAACTGATAGCTCTAA
                     ttctgat  putative branch site (score: 3)
                                             tcattctt  putative PPT
                                               attctta  TA-rich tract