1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaggaaattctttaaaaaccacaccatagtctcttagattattggtctaacatcacttgttcttcgtgtggtgttatttcagATGACACAGGGATGTTTTGGGGAGTCCAGTTTTATAATGATGTTTTGCTTCAAGAAGGAAAGATTGGGAATGTTCAAACAGAGTTATTGCTGAAGAAGGA
species | Arabidopsis thaliana |
transcript | AT1G09790.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGTCTTTAGCTTTAACTACAAATCTTTGACACCATATCAAAACAGCATCA ATGACACAGG-ATGTTTTGGGGAGTCCAGTTTTATAATGATGTTTTGCTTCEST: gi|164077273|gb|ES006749.1|ES006749
genomic: AGTCTTTAGCTTTAACTACAAATCTTTGACACCATATCAAAACAGCATCAgtaaggaaat ... gttatttcagATGACACAGGGATGTTTTGGGGAGTCCAGTTTTATAATGATGTTTTGCTTC
EST: TATCAAAACAAGCATCA ATGACACAGGGATGTTTTGGGGAGTCCAGTTTTATAATGATGTTTTGCTT
genomic: TATCAAAAC-AGCATCAgtaaggaaat ... gttatttcagATGACACAGGGATGTTTTGGGGAGTCCAGTTTTATAATGATGTTTTGCTT
agtctcttagattattggtctaacatcacttgttcttcgtgtggtgttatttcagATGACACAGGGATGTTTTGGGGAGTCCAGTTTTATAATGATGTTTTGCTTCAAGAAGGAAAGATTGGGAATGTTCAAACAGAGTTATTGCTGAAGAAGGA
gtctaac putative branch site (score: 2)
ttatttc putative PPT
ttagattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaaattctttaaaaaccacaccatagtctcttagattattggtctaacatcacttgttcttcgtgtggtgttatttcagATGACACAGGGATGTTTTGGGGAGTCCAGTTTTATAATGATGTTTTGCTTCAAGAAGGAAAGATTGGGAATGTTCAAACAGAGTTATTGCTGAAGAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG