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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagctgttttttccctgggggctactcttctctaatccattgacacctcttctattgtttgtcattctatttgttagtattctcaatggttatctgcatgttgttttttcgcagGCACAAATTGAGCAATGGATTGATTTCTCTTCATTGGAGATCTATGCAAGTATCTTGAGGTGGTTCGGCCCAAGAATGGGCTTTATGCCATACAGTGCTC

Basic information

species Arabidopsis thaliana
transcript AT1G09640.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057552|gb|DR353309.1|DR353309
EST:     GCCGATTGAATGGTGACAACTCTTTGAACGGATCCTCCCTGATCGAATAT                         GCACAAATTGAGCAATGGATTGATTTCTCTTCATTGGAGATCTATGCAAGT
genomic: GCCGATTGAATGGTGACAACTCTTTGAACGGATCCTCCCTGATCGAATATgtaagtagct ... tttttcgcagGCACAAATTGAGCAATGGATTGATTTCTCTTCATTGGAGATCTATGCAAGT
EST: gi|125183927|gb|EL198881.1|EL198881
EST:     TGGTGACAACTCTTTGAACGGATCCTCCCTGATCGAATAT                         GCACAAATTGAGCAATGGATTGATTTCTCTTCATTGGAGATCTATGCAAGT
genomic: TGGTGACAACTCTTTGAACGGATCCTCCCTGATCGAATATgtaagtagct ... tttttcgcagGCACAAATTGAGCAATGGATTGATTTCTCTTCATTGGAGATCTATGCAAGT
EST: gi|47829190|gb|CK118874.1|CK118874
EST:     GCCGATTGAATGGTGACAACTCTTTGAACGGATCCTCCCTGATCGAATAT                         GCACAAATTGAGCAATGGATTGATTTCTCTTCATTGGAGATCTATGCAAGT
genomic: GCCGATTGAATGGTGACAACTCTTTGAACGGATCCTCCCTGATCGAATATgtaagtagct ... tttttcgcagGCACAAATTGAGCAATGGATTGATTTCTCTTCATTGGAGATCTATGCAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcattctatttgttagtattctcaatggttatctgcatgttgttttttcgcagGCACAAATTGAGCAATGGATTGATTTCTCTTCATTGGAGATCTATGCAAGTATCTTGAGGTGGTTCGGCCCAAGAATGGGCTTTATGCCATACAGTGCTC
                                         ttgttttttc  CT-rich tract
        tatttgttagtatt  TA-rich tract