Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgtcaatactttattctctagtagctagctcgcttcttttactgcttctatctacagctttcttcattttcttatgccaaggaaaagtttgtagaactaactctcgatgtgatgcttactttatccaggtacaagaaaatcttgacttgttataattactgtctaatgaagttttcattccttgtggcagCATTTGGATCGCTCCGGGTTGCAGAACTCGACTGGGGAAACGAAGATCATATAACGGCCGTTGAGCCTCCCTTTGACTATGTCATCGGTACTGATGTT

Basic information

species Arabidopsis thaliana
transcript AT1G08125.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116414102|gb|EG456694.1|EG456694
EST:     GAATGTAGAATGGAATACGTCCAGAATCATACAGATGAATCCTGGTTCAG                         CATTTGGATCGCTCCGGGTTGCAGAACTCGACTGGGGAAACGAAGACCATA
genomic: GAATGTAGAATGGAATACGTCCAGAATCGTACAGATGAATCCTGGTTCAGgtttgtgtca ... cttgtggcagCATTTGGATCGCTCCGGGTTGCAGAACTCGACTGGGGAAACGAAGATCATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatcttgacttgttataattactgtctaatgaagttttcattccttgtggcagCATTTGGATCGCTCCGGGTTGCAGAACTCGACTGGGGAAACGAAGATCATATAACGGCCGTTGAGCCTCCCTTTGACTATGTCATCGGTACTGATGTT
                         gtctaat  putative branch site (score: 3)
                                    ttttcattccttgt  putative PPT
         acttgttataatta  TA-rich tract