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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcattcactccaatcctaaacatttcatcttttgtctccaccactgaagaagaaaatgagtttctaagtatgaatctggaatttgcagCATCGGACCGGTTGTCTTGTTGGTTGCTTGAGGAAGCTCCAGAAATGGTGTTTGACATCGATATTCGACGAGTACCAACGATTTGCAGCAGCGAAAGCTA

Basic information

species Arabidopsis thaliana
transcript AT1G05000.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G05000.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: LOC_Os06g10650.1 (Oryza sativa), 3'ss of exon 4
gtaaatc--attcactccaatcctaaacatttcatcttttgtctccaccactgaagaagaaaa---tgagtttctaagt--atgaatctggaattt--------gcagCATCGGACCGGTTGTCTTGTTGGTTGCTTGAGGAAGCTCCAGAAATGGTGTTTGACATCGATATTCGACGAGTACCAACGATTTGCAGCAGCGAAAGCTA
||||     ||    ||| |  ||||||  | ||  |  || |   | |    ||    | ||   |||| | ||||    |    ||     |||         ||||| || ||||| ||  | || || |||||||||||||| ||||||||||| ||| | ||  | |||||||||||||| || || || || ||||| || |
gtaagcttaatcagttcccacactaaactctgcaattgctgccattatcttccaaagcaagaactctgagatcctaaactgactgctccaatgtttccctatcttcagCACCGCACCGGCTGCGTCGTGGGGTGCTTGAGGAAGCTTCAGAAATGGTGCTTGTCTTCAGTGTTCGACGAGTACCAGCGCTTCGCCGCTGCGAAGGCGA

upper sequence: AT1G05000.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G134389_T01 (Zea mays), 3'ss of exon 4
gtaaatcattcactccaatcctaaacattt-catcttttgtctccaccactgaagaagaaaatgagttt---ctaagtat---gaatctgga-atttgcagCATCGGACCGGTTGTCTTGTTGGTTGCTTGAGGAAGCTCCAGAAATGGTGTTTGACATCGATATTCGACGAGTACCAACGATTTGCAGCAGCGAAAGCTA
||||      | |||   |   ||   |||    ||  | || | |  |   |    ||   ||  | |   |||| | |     || || | || ||||||| || || |||||| | || || |||||||||||||| ||||||||||| ||| | ||  | |||||||||||||| || ||||| || ||||||||  
gtaagatcagctctcagtttacaactgtttgtggctgctatcccaagaaacaactgtgaccctggttctgaactaactgttcgatatttgcatatctgcagCACCGAACTGGTTGTTTGGTCGGGTGCTTGAGGAAGCTGCAGAAATGGTGCTTGTCTTCAGTCTTCGACGAGTACCATCGCTTTGCCGCTGCGAAAGCGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctccaccactgaagaagaaaatgagtttctaagtatgaatctggaatttgcagCATCGGACCGGTTGTCTTGTTGGTTGCTTGAGGAAGCTCCAGAAATGGTGTTTGACATCGATATTCGACGAGTACCAACGATTTGCAGCAGCGAAAGCTA
                aagaaaat  TA-rich tract