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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctttttgtgttctcatcagcaaattttcacctatttttgattaatcaaagctcagtgacatttcgatttacatgtctagGAATCTATGAAGAATATATTACTTGTATTTGCGAAGTTAAACCAAGGCATCAGATATGTTCAAGGGATGAACGAAATTTTAGCACCTATCTTTTATGTAT

Basic information

species Arabidopsis thaliana
transcript AT1G04830.2
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G04830.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GRMZM2G122935_T01 (Zea mays), 3'ss of exon 5
gtaacctttttgtgttct-catcagcaaattttcacctatttttgattaatcaaagctcagtgacatttcgatttacatgtctagGAATCTATGAAGAATATATTACTTGTATTTGCGAAGTTAAACCAAGGCATCAGATATGTTCAAGGGATGAACGAAATTTTAGCACCTATCTTTTATGTAT
        ||||| |||    |   ||   ||    ||  |    |||   | ||  | | |    | |    | ||      |||||||  ||| ||  || ||| || ||||| | || || ||||   | || |||||||| ||||||||||| ||| |||| |||||| | ||||||||||
-------gtttgtattcagtgtttacagtgttcgtactgataccaattgtaccaatatgacttgattattctctgaccctatcagGAATCCTTGAGGAGAATTTTAATTATATTTTCAAAATTGAACCCCAGTATAAGATATGTGCAAGGGATGAATGAAGTTTTGGCACCTTTATTTTATGTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcacctatttttgattaatcaaagctcagtgacatttcgatttacatgtctagGAATCTATGAAGAATATATTACTTGTATTTGCGAAGTTAAACCAAGGCATCAGATATGTTCAAGGGATGAACGAAATTTTAGCACCTATCTTTTATGTAT
              gattaat  putative branch site (score: 3)
       tatttttgattaatca  TA-rich tract