1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtatttgcttcttttttctgttccgttggttattttgagttttgaggaattaggaccagatcttttgttttgtatgccatatgtcacagtcatgctttgttttttttaaatacagATGACCATAAAACCAAGGGAAGTGGGTTAGCTCCTTGGCCAGCTAGGTTGACTTCTTCTCCTCCCCGTCTTGCGGATTTCGGTTATTCAACCGACATGTT
species | Arabidopsis thaliana |
transcript | AT1G04430.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGGTTGCGGGTGTTTCAATGGAAGCTTGCATCACTCCTTACTCCAAGC ATGACCATAAAACCAAGGGAAGTGGGTTAGCTCCTTGGCCAGCTAGGTTGAEST: gi|125023840|gb|EL096109.1|EL096109
genomic: CGGTTGCGGGTGTTTCAATGGAAGCTTGCATCACTCCTTACTCCAAGCgtaagtattt ... ttaaatacagATGACCATAAAACCAAGGGAAGTGGGTTAGCTCCTTGGCCAGCTAGGTTGA
EST: CCTTACTCCAAGC ATGACCATAAAACCAAGGGAAGTGGGTTAGCTCCTTGGCCAGCTAGGTTGA
genomic: CCTTACTCCAAGCgtaagtattt ... ttaaatacagATGACCATAAAACCAAGGGAAGTGGGTTAGCTCCTTGGCCAGCTAGGTTGA
tcttttgttttgtatgccatatgtcacagtcatgctttgttttttttaaatacagATGACCATAAAACCAAGGGAAGTGGGTTAGCTCCTTGGCCAGCTAGGTTGACTTCTTCTCCTCCCCGTCTTGCGGATTTCGGTTATTCAACCGACATGTT
tgctttgtttttttt CT-rich tract
atgctttgtttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatttgcttcttttttctgttccgttggttattttgagttttgaggaattaggaccagatcttttgttttgtatgccatatgtcacagtcatgctttgttttttttaaatacagATGACCATAAAACCAAGGGAAGTGGGTTAGCTCCTTGGCCAGCTAGGTTGACTTCTTCTCCTCCCCGTCTTGCGGATTTCGGTTATTCAACCGACATGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC