1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagcgccaagcaatattcttttgtctttttcctcttctactttttcatataattaactccgtccctcttcctccttcactaaacagATCGACCTATTGCTTCCATTGCTTTCCACGCTGGAGGTGAATTACTTGCTGTTGCATCTGGTCATAAG
species | Arabidopsis thaliana |
transcript | AT1G04140.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGCTTATGGAATGCAAAA-CTGGGGGAGTGTATCAGAACTCATGATTTCT ATCGACCTATTGCTTCCATTGCTTTCCACGCTGGAGGTGAATTACTTGCTGEST: gi|86085412|gb|DR381171.1|DR381171
genomic: CGCTTATGGAATGCAAAAACTGGGG-AGTGTATCAGAACTCATGATTTCTgtaagcgcca ... cactaaacagATCGACCTATTGCTTCCATTGCTTTCCACGCTGGAGGTGAATTACTTGCTG
EST: GCGCTTATGGAATGCAAAAACTGGGGAGTGTATCAGAACTCATGATTTCT ATCGACCTATTGCTTCCATTGCTTTCCACGCTGGAGGTGAATTACTTGCTG
genomic: GCGCTTATGGAATGCAAAAACTGGGGAGTGTATCAGAACTCATGATTTCTgtaagcgcca ... cactaaacagATCGACCTATTGCTTCCATTGCTTTCCACGCTGGAGGTGAATTACTTGCTG
ctcttctactttttcatataattaactccgtccctcttcctccttcactaaacagATCGACCTATTGCTTCCATTGCTTTCCACGCTGGAGGTGAATTACTTGCTGTTGCATCTGGTCATAAG
aattaac putative branch site (score: 2)
ttaactccgtccctct CT-rich tract
tactttttcatataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgccaagcaatattcttttgtctttttcctcttctactttttcatataattaactccgtccctcttcctccttcactaaacagATCGACCTATTGCTTCCATTGCTTTCCACGCTGGAGGTGAATTACTTGCTGTTGCATCTGGTCATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT