1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatagcattggtgatcttgattgcaaatctaatgacatgagattagtggttttggcctgaagcattagctctttttgaatctttgtgcagGGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAGGCATTCATCACTCTGAGAAAGATTGAAGCTGCGAGAGAGATTGCACAGA
species | Arabidopsis thaliana |
transcript | AT1G03860.3 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAG GGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAGEST: gi|86032647|gb|DR328400.1|DR328400
genomic: TTGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAGgtatagcatt ... ctttgtgcagGGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAG
EST: TTGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAG GGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAGEST: gi|86075194|gb|DR370951.1|DR370951
genomic: TTGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAGgtatagcatt ... ctttgtgcagGGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAG
EST: TTGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAG GGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAGEST: gi|116435505|gb|EG478097.1|EG478097
genomic: TTGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAGgtatagcatt ... ctttgtgcagGGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAG
EST: TTGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAG GGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAGEST: gi|86088276|gb|DR384035.1|DR384035
genomic: TTGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAGgtatagcatt ... ctttgtgcagGGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAG
EST: TTGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAG GGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAG
genomic: TTGTGGAGAAAGCCGAACAAGACAGGAGAAGTGCGGTTATCCGTGCGCAGgtatagcatt ... ctttgtgcagGGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAG
catgagattagtggttttggcctgaagcattagctctttttgaatctttgtgcagGGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAGGCATTCATCACTCTGAGAAAGATTGAAGCTGCGAGAGAGATTGCACAGA
tctttgt CT-rich tract
tttttgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagcattggtgatcttgattgcaaatctaatgacatgagattagtggttttggcctgaagcattagctctttttgaatctttgtgcagGGAGAAGCTAAAAGTGCTCAGCTTATCGGACAAGCAATTGCGAACAATCAGGCATTCATCACTCTGAGAAAGATTGAAGCTGCGAGAGAGATTGCACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC