1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttatacaaatctttgaaactaatcaaagattccaaatttagaccattggttcttgaattcttatgaaacattttttgtgtgactttgttttgttttttcaagGAGTTTCTGATTCAGAAAGTGAAGTCACTTGAAGAATACAAAGAGCATGCTGATAGTTTCATTTGCTCTGTTCTACCTGGAGCATCCTCTTCCCAATATA
species | Arabidopsis thaliana |
transcript | AT1G02800.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTTTAGTTGGGATAATAAGCACGTTGGTGCTAGAATCCTTCTCTCCCAG GNNTT-CTGATTCAGAAAGTGA-GTCACTTGA-GAATACAA-GAGCATGCTEST: gi|164070830|gb|ES126610.1|ES126610
genomic: TGTTTAGTTGGGATAATAAGCACGTTGGTGCTAGAATCCTTCTCTCCAAGgttatacaaa ... ttttttcaagGAGTTTCTGATTCAGAAAGTGAAGTCACTTGAAGAATACAAAGAGCATGCT
EST: GCACGTTGGTGCTAGAATCCTTCTCTCCAAG GAGTTTCTGATTCAGAAAGTGAAGTCACTTGAAGAATACAAAGAGCATGCT
genomic: GCACGTTGGTGCTAGAATCCTTCTCTCCAAGgttatacaaa ... ttttttcaagGAGTTTCTGATTCAGAAAGTGAAGTCACTTGAAGAATACAAAGAGCATGCT
ggttcttgaattcttatgaaacattttttgtgtgactttgttttgttttttcaagGAGTTTCTGATTCAGAAAGTGAAGTCACTTGAAGAATACAAAGAGCATGCTGATAGTTTCATTTGCTCTGTTCTACCTGGAGCATCCTCTTCCCAATATA
ctttgttttgtttttt CT-rich tract
aattcttatgaaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatacaaatctttgaaactaatcaaagattccaaatttagaccattggttcttgaattcttatgaaacattttttgtgtgactttgttttgttttttcaagGAGTTTCTGATTCAGAAAGTGAAGTCACTTGAAGAATACAAAGAGCATGCTGATAGTTTCATTTGCTCTGTTCTACCTGGAGCATCCTCTTCCCAATATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA