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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgacatatttacactacttttagaccaaattattgttcattgataatcatattttgttttctctcttcgtgcagCAAGGTCTCCTTTGAACACTTCCTCTG

Basic information

species Arabidopsis thaliana
transcript AT1G01920.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069207|gb|DR364964.1|DR364964
EST:     GTGGAGGTCCTGGTGACAAAGCTTCTTATTTTGGATGGCGATTCCGAAAG                         CAAGGTCTCCTTTGAACACTTCCTCTG
genomic: GTGGAGGTCCTGGTGACAAAGCTTCTTATTTTGGATGGCGATTCCGAAAGgttgacatat ... cttcgtgcagCAAGGTCTCCTTTGAACACTTCCTCTG
EST: gi|164063789|gb|ES200662.1|ES200662
EST:     GTGGAGGTCCTGGTGACCAAGCTTCTTATTTTGGATGGCGATTCCGAAAG                         CAAGGTCTCCTTTGAACACTTCCTCTGGGCAAACTC
genomic: GTGGAGGTCCTGGTGACAAAGCTTCTTATTTTGGATGGCGATTCCGAAAGgttgacatat ... cttcgtgcagCAAGGTCTCCTTTGAACACTTCCTCTGGGCAAACTC
EST: gi|19874501|gb|AU235332.1|AU235332
EST:     GTGGAGGTCCTGGTGACAAAGCTTCTTATTTTGGATGGCGATTCCGAAAG                         CAAGGTCTCCTTTGAACACTTCCTCTG
genomic: GTGGAGGTCCTGGTGACAAAGCTTCTTATTTTGGATGGCGATTCCGAAAGgttgacatat ... cttcgtgcagCAAGGTCTCCTTTGAACACTTCCTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagaccaaattattgttcattgataatcatattttgttttctctcttcgtgcagCAAGGTCTCCTTTGAACACTTCCTCTG
                  cattgat  putative branch site (score: 4)
                           tcatattttgttttct  putative PPT
       aaattattgttcattg  TA-rich tract