1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtctgttcactgccattgaattgtctcttacttctggttcaaatgcaataccgcataatgtaataatttcgacatgtttagGTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAGATAGGGAACAAGGATAAACACCAG
species | Arabidopsis thaliana |
transcript | AT1G01820.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTTGCACANCCTTGGTTGAG GTTGGGGAGGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAEST: gi|164126170|gb|ES186468.1|ES186468
genomic: TTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagGTTGGGGA-GCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGA
EST: TATCACTTTTCTGTTGGATGGGTTCTTC-GTTTGCACATCCTTGGTTGAG GTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAGEST: gi|164180632|gb|ES012098.1|ES012098
genomic: TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagGTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAG
EST: ATCACTTTTCTGTTGGATGGGTTCTTTCGGTTTGCACATCCTTGGTTGAG GTTGGGGAGCTTGGTAGGCTGTCAGCEST: gi|125166579|gb|EL192309.1|EL192309
genomic: ATCACTTTTCTGTTGGATGGGTTCTT-CGGTTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagGTTGGGGAGCTTGGTAGGCTGTCAGC
EST: TATCACTTTTCTGTTTGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAG GGTTGGGGAGCTTGEST: gi|164079533|gb|ES202106.1|ES202106
genomic: TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagG-TTGGGGAGCTTG
EST: GTTGGATGGGGTTCTTCGGTTTTGCACATCCTTGGTTGAG GTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAGEST: gi|164009723|gb|ES007907.1|ES007907
genomic: GTTGGAT-GGGTTCTTCGG-TTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagGTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAG
EST: TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAG GTTGGGGAGCTTGGTAGGCTGTCAGCEST: gi|86078612|gb|DR374369.1|DR374369
genomic: TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagGTTGGGGAGCTTGGTAGGCTGTCAGC
EST: TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAG GTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAGEST: gi|86081227|gb|DR376984.1|DR376984
genomic: TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagGTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAG
EST: TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAG GTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAWAAAGAG
genomic: TATCACTTTTCTGTTGGATGGGTTCTTCGGTTTGCACATCCTTGGTTGAGgtctgttcac ... acatgtttagGTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAG
cttacttctggttcaaatgcaataccgcataatgtaataatttcgacatgtttagGTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAGATAGGGAACAAGGATAAACACCAG
ctcttac putative branch site (score: 3)
ataatgtaataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgttcactgccattgaattgtctcttacttctggttcaaatgcaataccgcataatgtaataatttcgacatgtttagGTTGGGGAGCTTGGTAGGCTGTCAGCATCAATTAAGAAGTTAGAAAAAGAGATAGGGAACAAGGATAAACACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA