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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgcctttttctcttctgtaattgttttgcattggacactaaaggatatagtcgatggtaacttaaagtggtctcttttttggtgtgtttattaattgcgtagGTTCATTTCCTATACAAAGGGACATTGAGAGTATTACTGGTTCTGCTTCATGATTTCCCAGAGTTCCTATGTGATTATCATTTTACTTTCTGTGATGTGA

Basic information

species Arabidopsis thaliana
transcript AT1G02080.2
intron # 44
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G02080.2 (Arabidopsis thaliana), 3'ss of exon 44
lower sequence: GLYMA03G27270.1 (Glycine max), 3'ss of exon 46
gtttgtgcctttttctcttctgtaattgttttgcattggacactaaaggatatagtcgatggtaacttaaagtggtctcttttttggtgtgtttattaattgcgtagGTTCATTTCCTATACAAAGGGACATTGAGAGTATTACTGGTTCTGCTTCATGATTTCCCAGAGTTCCTATGTGATTATCATTTTACTTTCTGTGATGTGA
||||||  || | |||   |   |||| ||| || |   ||      |  |||   | ||  |   |   |    |   |||||| ||    || || ||  |  |||||| | |||| || ||||| ||| | || ||  |  | || || |||||||| ||||| ||||| || ||||||||||| ||||| || |||||||| |
gtttgt--ctatatcttggcctcaattattt-gcttccaact---gggtctatgcacaataatgcttcttacatctacatttttttgttaacttttttatgac-cagGTTCGTGTCCTCTATAAAGGCACACTTAGGGTGCTCTTAGTGCTACTTCATGACTTCCCGGAGTTTCTCTGTGATTATCACTTTACCTTTTGTGATGTTA

upper sequence: AT1G02080.2 (Arabidopsis thaliana), 3'ss of exon 44
lower sequence: GLYMA03G27260.1 (Glycine max), 3'ss of exon 29
gtttgtgcctttttct-cttctgtaattgttttgcattggacactaaaggatatagtcgatggta-acttaaagtggtctcttttttggtgtgtttattaattgcgtagGTTCATTTCCTATACAAAGGGACATTGAGAGTATTACTGGTTCTGCTTCATGATTTCCCAGAGTTCCTATGTGATTATCATTTTACTTTCTGTGATGTGA
||||||   | | ||  | ||  | |||   || ||   |   |||      ||| |   |  || |  || | | || | ||||||  |||  || || ||  |  |||||| | |||| || ||||| ||| | || ||  |  | || || |||||||| ||||| ||||| || ||||||||||| ||||| || |||||||| |
gtttgtctatatctcggcctcaattatttgcttccaactgggtctatgcacaataatgcttcttacatctacatttgtttttttttt--tgtacttttttatgac-cagGTTCGTGTCCTCTATAAAGGCACACTTAGGGTGCTCTTAGTGCTACTTCATGACTTCCCGGAGTTTCTCTGTGATTATCACTTTACCTTTTGTGATGTTA

upper sequence: AT1G02080.2 (Arabidopsis thaliana), 3'ss of exon 44
lower sequence: Vv00s0144g00010.t01 (Vitis vinifera), 3'ss of exon 17
gtttgtgcctttttctcttctg---taattgttt-tgcattggacact--aaaggatatagtcgatggtaacttaaagtggtctcttttttggtgtgttt-attaattgcgtagGTTCATTTCCTATACAAAGGGACATTGAGAGTATTACTGGTTCTGCTTCATGATTTCCCAGAGTTCCTATGTGATTATCATTTTACTTTCTGTGATGTGA
|||||   |||   ||  |  |   ||||| ||| |   ||  | | |  | || ||||| |   || |  |||    |  | || ||  | || ||||| | |  ||    || | | ||| ||||| ||||| ||  | || ||| | || || ||||| ||||||||||| |||||||| |||||||||||||| |  |||||||||||||
gtttgcttcttcagcttattgggtttaattatttgtcttttaaatatttcagagaatatattatttgctggctt----ttctatccttaattgtttgtttcaatttttttacagATACTTTTTCTATATAAAGGCACTCTAAGGGTACTGCTTGTGCTGCTCCATGATTTCCCGGAGTTCCTGTGTGATTATCATTTCAGCTTCTGTGATGTGA

upper sequence: AT1G02080.2 (Arabidopsis thaliana), 3'ss of exon 44
lower sequence: Vv15s0021g02610.t01 (Vitis vinifera), 3'ss of exon 13
gtttgtgcctttttctcttctgtaattgttttgcattggacactaaaggatatagtcgatggtaacttaaagtggtctcttttttggtgtgtttattaattgcgtagGTTCATTTCCTATACAAAGGGACATTGAGAGTATTACTGGTTCTGCTTCATGATTTCCCAGAGTTCCTATGTGATTATCATTTTACTTTCTGTGATGTGA
   | ||||| |||   ||     ||  | ||   |||    |       ||||| |     | | ||| | |    | |  ||| |||| ||| || |  | | |||||||||| || || | ||| ||| | || ||  |  |  | || |||||||||||||| ||||| |||||||  ||||||||||| |||||||||||||
--gtttgcctcttttaattgcagcatcatctt--cttgcttgcagctcactataggctgaaatta-ttacattttgttttcctttcgtgt-ttttttgaccgtgcagGTTCATTTTCTGTATAGAGGCACACTTAGGGTGCTGTTAATGCTACTTCATGATTTCCCGGAGTTTCTATGTGGCTATCATTTTACCTTCTGTGATGTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtcgatggtaacttaaagtggtctcttttttggtgtgtttattaattgcgtagGTTCATTTCCTATACAAAGGGACATTGAGAGTATTACTGGTTCTGCTTCATGATTTCCCAGAGTTCCTATGTGATTATCATTTTACTTTCTGTGATGTGA
                                         tattaat  putative branch site (score: 2)
                                   tgtgtttattaatt  TA-rich tract