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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaagctccaaattgatctgctaaaagctttagtttttattgtttttgaatgacttgaaatcataacaagtactatgtcttagGTCTTTCTGATAAATGCAGCTGACCCATTTTCTGGTTTGGCATTGGTTTGGGAACACAATGCTCCAGCCCACTGCATAATCGAGCATCATCAGGGATTCC

Basic information

species Arabidopsis thaliana
transcript AT5G66960.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66960.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA16G26000.1 (Glycine max), 3'ss of exon 3
gtgaaagc--tccaaattgatctgctaaaagctttagtttttattgtttttgaatgacttgaaatcataacaagtactatgtcttagGTCTTTCTGATAAATGCAGCTGACCCATTTTCTGGTTTGGCATTGGTTTGGGAACACAATGCTCCAGCCCACTGCATAATCGAGCATCATCAGGGATTCC
|| ||     | |  |  || || || |||  || || |  |  || | ||| || |     |||  ||||       || |||||||||||||| |||||||||||||||||||| ||||| |||  | | ||||||||     ||| || ||| ||||||||||| || ||||| |  || | ||
gtaaagatctttcctagggaact-ctgaaaaattaagatcct--tggtattggataat----aattgtaac------catttcttagGTCTTTCTAATAAATGCAGCTGACCCATTGTCTGGCTTGAAACTAGTTTGGGAGTGTGATGTTCTAGCTCACTGCATAATTGAACATCACCGAGGTTACC

upper sequence: AT5G66960.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G06940.1 (Glycine max), 3'ss of exon 3
gtgaaagctccaaatt--gatctgctaaaagctttagtttttattgtttttgaatgacttgaaatcataacaagtactatgtcttagGTCTTTCTGATAAATGCAGCTGACCCATTTTCTGGTTTGGCATTGGTTTGGGAACACAATGCTCCAGCCCACTGCATAATCGAGCATCATCAGGGATTCC
|| |||| ||     |  |     || |||  || || |  |  || | ||| || |     |||  ||||       || |||||||||||||| ||||||||||||||||  || ||||| |||  | | ||||||||     | |||| ||| ||||||| ||| || ||||| |  || | ||
gtaaaagatctttcctagggaactctgaaaaattaagatcct--tggtattggataat----aattgtaac------catttcttagGTCTTTCTAATAAATGCAGCTGACCTGTTGTCTGGCTTGAAACTAGTTTGGGAGTGTGACGCTCTAGCTCACTGCACAATTGAACATCACCGAGGTTACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttagtttttattgtttttgaatgacttgaaatcataacaagtactatgtcttagGTCTTTCTGATAAATGCAGCTGACCCATTTTCTGGTTTGGCATTGGTTTGGGAACACAATGCTCCAGCCCACTGCATAATCGAGCATCATCAGGGATTCC
                                tcataac  putative branch site (score: 2)
     tttttattgtttttga  TA-rich tract