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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatacagataacaaatgcttgatttccatttcattgacagtgaaccacatattccataccttgctcaagcaaggattgaacgtttctgcagcatatagggttgtataatgaagtaatgatctcatccttttcattgtctcatcctttgtggctgttaatgatctctttttctttttgccaagATTTGTCTATCGTTCTATGAAGTCAAAAGCAAACAGCCTTCTTGGTTCACCAAAATCGAACGGTTGTACTGGGAACAATGGTACATCAATCTGAATGTGC

Basic information

species Arabidopsis thaliana
transcript AT5G66930.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125307186|gb|EL321271.1|EL321271
EST:     TTGAGCAGTTCATTAACTTGATTGAGAAACACCCAAACAAAAAGAGTCAG                         ATTTGTCTATCGTTCTATGAAGTC
genomic: TTGAGCAGTTCATTAACTGGATTGAGAAACACCCAAACAAAAAGAGTCAGgtatatacag ... ttttgccaagATTTGTCTATCGTTCTATGAAGTC
EST: gi|124827318|gb|EH912184.1|EH912184
EST:     ATTGAGAAACACCCAAACAAAAAGAGTCAG                         ATTTTGTTCTATCGTTCTATGAAGTCAAAAGCAAACAGCCTTCTTGGTTCA
genomic: ATTGAGAAACACCCAAACAAAAAGAGTCAGgtatatacag ... ttttgccaagA-TTTG-TCTATCGTTCTATGAAGTCAAAAGCAAACAGCCTTCTTGGTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcattgtctcatcctttgtggctgttaatgatctctttttctttttgccaagATTTGTCTATCGTTCTATGAAGTCAAAAGCAAACAGCCTTCTTGGTTCACCAAAATCGAACGGTTGTACTGGGAACAATGGTACATCAATCTGAATGTGC
                         tgttaat  putative branch site (score: 3)
                               tgatctctttttcttt  CT-rich tract
                                      tttttcttttt  TA-rich tract