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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctaacaggcgccataaacatctcatttctcctatgttttttcgatctcagtatcaagggaatgatgctttcagGTCTGTTTATGCACAAATCCTATTTGGCTTGTCAAAACAAGGTTACAGCTTCAGACACCTCTTCATCAAACTCAACCATACTCAGGGCTATTAG

Basic information

species Arabidopsis thaliana
transcript AT5G66380.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66380.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv04s0023g02600.t01 (Vitis vinifera), 3'ss of exon 4
----------------------------gtgagtctaacaggcgccataaacatctcatttctcctatgttttttcgatctcagtatcaagggaatgatgctttcagGTCTGTTTATGCACAAATCCTATTTGGCTTGTCAAAACAAGGTTACAGCTTCAGACACCTCTTCATCAAACTCAACCATACTCAGGGCTATTAG
                               | || |  |||   ||| |   |  ||     || || |  | | ||   || || |||     ||    | |||||| | ||| ||||| |||||||||||| || | ||||||||| | |||||| |||| |||||||||||||| | ||||||||| ||||| |  |
ttttagtttctgagtattttcaagaaagaatattccagtaggtttcatgagtgttacaac---ccaatatcctattga---caata-caactttttggcattctcagGTTTCTTTGTGCACTAATCCTATTTGGGTTATAAAAACAAGGCTGCAGCTTGAGACTCCTCTTCATCAAACCCGACCATACTCTGGGCTTTATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctcatttctcctatgttttttcgatctcagtatcaagggaatgatgctttcagGTCTGTTTATGCACAAATCCTATTTGGCTTGTCAAAACAAGGTTACAGCTTCAGACACCTCTTCATCAAACTCAACCATACTCAGGGCTATTAG
                                              tgctttc  CT-rich tract
             tatgtttttt  TA-rich tract