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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattctcttgcttatacctcttaggatgtgctttttgtttctaataataaatcttctgcttttgctcctcctccaatttcttgcagAACTTTTTGTTCAAATCAGCTCAACTAGATTCGCCTCTAAAGGCTACGGATTTTGGTTTATCGGATTTTATCAAACCAG

Basic information

species Arabidopsis thaliana
transcript AT5G66210.4
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66210.2 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA11G08180.1 (Glycine max), 3'ss of exon 5
gtacattc--tcttgcttatacctcttaggatgtgctttttgtttctaataataaatcttctgcttttgctcctcctccaatttcttgcagAACTTTTTGTTCAAATCAGCTCAACTAGATTCGCCTCTAAAGGCTACGGATTTTGGTTTATCGGATTTTATCAAACCAG
||    ||    |||||   |  |||    | |   | |    || |   | |  |   | |   ||   |  | |  |  || | ||||||| ||| | ||||| ||| |  ||  |||||| ||| |||||||||| ||||||||||| || |||||||| ||||| |
gtgtggtcaagtttgctggcatatct----acgcaatatggagttgtgtaattttactctatatattaaatttttcctct-ttgcatgcagAATTTTCTTTTCAAGTCAACCAAAGAAGATTCACCTTTAAAGGCTACCGATTTTGGTTTGTCTGATTTTATAAAACCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgtttctaataataaatcttctgcttttgctcctcctccaatttcttgcagAACTTTTTGTTCAAATCAGCTCAACTAGATTCGCCTCTAAAGGCTACGGATTTTGGTTTATCGGATTTTATCAAACCAG
       ttctaat  putative branch site (score: 2)
                    tcttctgcttttgctc  putative PPT
      tttctaataataaatc  TA-rich tract