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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttgtgtcatttgcatatttctttttttaatgagatttctttggtcttgcactgatgattaagggagcttcacattcattatagGAAAAGGAGATAAGAAGATTTTCAGGAACAGTACCAAACATGACGACAACAGGCGACTTAGAGAGTATGGCTATGTATGCAGGCCAAAGCGTAGGCCTTA

Basic information

species Arabidopsis thaliana
transcript AT5G64250.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085743|gb|DR381502.1|DR381502
EST:     AGAATGAAGTTAACCAACCTATTATTGGACGTTCCACCATACATGGCGTT                         GAAAAGGAGATAAGAAGATTTTCAGGAACAGTACCAAACATGACGACAACA
genomic: AGAATGAAGTTAACCAACCTATTATTGGACGTTCCACCATACATGGCGTTgtaagttgtg ... ttcattatagGAAAAGGAGATAAGAAGATTTTCAGGAACAGTACCAAACATGACGACAACA
EST: gi|164217331|gb|ES062563.1|ES062563
EST:     AGAATGAAGTTAACCAACCTATTATTGGACGTTCCATCATACATGGCGTT                         GAAAAGGAGATAAGAAGATTTT
genomic: AGAATGAAGTTAACCAACCTATTATTGGACGTTCCACCATACATGGCGTTgtaagttgtg ... ttcattatagGAAAAGGAGATAAGAAGATTTT
EST: gi|86086960|gb|DR382719.1|DR382719
EST:     CCATACATGGCGTT                         GAAAAGGAGATAAGAAGATTTTCAGGAACAGTACCAAACATGACGACAACA
genomic: CCATACATGGCGTTgtaagttgtg ... ttcattatagGAAAAGGAGATAAGAAGATTTTCAGGAACAGTACCAAACATGACGACAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgagatttctttggtcttgcactgatgattaagggagcttcacattcattatagGAAAAGGAGATAAGAAGATTTTCAGGAACAGTACCAAACATGACGACAACAGGCGACTTAGAGAGTATGGCTATGTATGCAGGCCAAAGCGTAGGCCTTA
                    cactgat  putative branch site (score: 3)
                                            attcattata  TA-rich tract