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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttttaaaactaactagcctaaagtcaaatcttcttatttcagagaaaatgtaaatttgatagaatgttgagtcagatgttatgttcctgacactgagcattttcatgattttagATTTCTGAGGGGAGATCAATACGCAGTAGCACTAGGATTGCTCGAGGAAGGGAAAGTAGTTTTAGGTGTGCTTGCTTGTCCAAACTTGCCGTTAGCATCC

Basic information

species Arabidopsis thaliana
transcript AT5G63980.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874586|gb|AU235417.1|AU235417
EST:     GGTCCAAATGGTCGACACTGGGTCTTGGATCCAATTGATGGCACTAAAGG                         ATTTCTGAGGGGAGATCAATACGCAGTAGCACTAGGATTGCTCGAGGAAGG
genomic: GGTCCAAATGGTCGACACTGGGTCTTGGATCCAATTGATGGCACTAAAGGgtacgtttta ... atgattttagATTTCTGAGGGGAGATCAATACGCAGTAGCACTAGGATTGCTCGAGGAAGG
EST: gi|116482884|gb|EG525476.1|EG525476
EST:     GGTCCAAATGGTCGACACTGGGTCTTGGATCCAATTGATGGCACTAAAGG                         ATTTCTGAGGGGAGATCAATACGCAGTAGCACTAGGATTGCTCGAGGAAGG
genomic: GGTCCAAATGGTCGACACTGGGTCTTGGATCCAATTGATGGCACTAAAGGgtacgtttta ... atgattttagATTTCTGAGGGGAGATCAATACGCAGTAGCACTAGGATTGCTCGAGGAAGG
EST: gi|124998655|gb|EL070924.1|EL070924
EST:     GGTCCAAATGGTCGACACTGGGTCTTGGATCCAATTGATGGCACTAAAGG                         ATTTCTGAGGGGAG
genomic: GGTCCAAATGGTCGACACTGGGTCTTGGATCCAATTGATGGCACTAAAGGgtacgtttta ... atgattttagATTTCTGAGGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaatgttgagtcagatgttatgttcctgacactgagcattttcatgattttagATTTCTGAGGGGAGATCAATACGCAGTAGCACTAGGATTGCTCGAGGAAGGGAAAGTAGTTTTAGGTGTGCTTGCTTGTCCAAACTTGCCGTTAGCATCC
                         tcctgac  putative branch site (score: 2)
                                        ttttcat  putative PPT
                                       attttcatgatttta  TA-rich tract