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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatttcttctttaaagtgttaaacttttgtgagatttttcgcaactgaaacctgttaagtttttggttatacagGTGTACTTCAGATCAGATGAAGTAAAAGCTTGCATAGTGACTTGTGGGGGCTTGTGCCCTGGAATCAATACTGTTATACGGGAAATTGTATGTGGATTGA

Basic information

species Arabidopsis thaliana
transcript AT5G61580.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G61580.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA10G33820.1 (Glycine max), 3'ss of exon 4
gtatgatttcttctttaaagtgttaaacttttgtgagatttttcgcaactgaaacctgttaagtttttggttatacagGTGTACTTCAGATCAGATGAAGTAAAAGCTTGCATAGTGACTTGTGGGGGCTTGTGCCCTGGAATCAATACTGTTATACGGGAAATTGTATGTGGATTGA
|||| |      | |  || |||    |  || ||  || ||| | ||||||       |   | ||    |||  |||| || ||||   |||| ||||||   |||||||||||||||||||| || || ||||| ||||| ||||| || ||  |||||||||||||||| ||||
gtataaaa----catggaaatgtctgtccatt-tgtaatctttagtaactgatgatgcct---tcttctaatat-tagGTTTATTTCAAGCCAGAAGAAGTACGTGCTTGCATAGTGACTTGTGGAGGATTATGCCCAGGAATTAATACAGTGATTAGGGAAATTGTATGTGGCTTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaacttttgtgagatttttcgcaactgaaacctgttaagtttttggttatacagGTGTACTTCAGATCAGATGAAGTAAAAGCTTGCATAGTGACTTGTGGGGGCTTGTGCCCTGGAATCAATACTGTTATACGGGAAATTGTATGTGGATTGA
                                   ttaagttttt  TA-rich tract