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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgtcacaaagagccagactgtttatgttctttagctggtttttcggatttcttataatgaattttttataaatttccagGGATCGTTAGCATGTTTGAAGAGCCGAGGATACATGGTGAGCTTTGGACAATCCTCAGGATCTCCAGATCCGATTCCATTATCTGATCTTGCTCCAAAGT

Basic information

species Arabidopsis thaliana
transcript AT5G61510.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124819914|gb|EH904780.1|EH904780
EST:     TAAAGGTAGTAAATGTTGTTTATGACTCTGTGGGAAAAGACACCTTTAAG                         GGATCGTTAGCATGTTTGAAGAGCCGAGGATACATGG
genomic: TAAAGG-AGTAAATGTTGTTTATGACTCTGTGGGAAAAGACACCTTTAAGgtattgtcac ... aaatttccagGGATCGTTAGCATGTTTGAAGAGCCGAGGATACATGG
EST: gi|19742503|gb|AU227856.1|AU227856
EST:     GTAAAGGAGTAAATGTTGTTTATGACTCTTTGGGAAAAGACACCTTTAA-                         GGATCGTTAGCATGTTT-AAGAGCCGAGGATACATGGTGAGCTTTGGACAA
genomic: GTAAAGGAGTAAATGTTGTTTATGACTCTGTGGGAAAAGACACCTTTAAGgtattgtcac ... aaatttccagGGATCGTTAGCATGTTTGAAGAGCCGAGGATACATGGTGAGCTTTGGACAA
EST: gi|124795596|gb|EH885275.1|EH885275
EST:     GTAAAGGAGTAAATGTTGTTTATGACTCTGTGGGAAAAGACACCTTTAAG                         GGATCGTTAGCATGTTTGAAGAGCCGAGGATACATGG
genomic: GTAAAGGAGTAAATGTTGTTTATGACTCTGTGGGAAAAGACACCTTTAAGgtattgtcac ... aaatttccagGGATCGTTAGCATGTTTGAAGAGCCGAGGATACATGG
EST: gi|116455505|gb|EG498097.1|EG498097
EST:     GTAAAGGAGTAAATGTTGTTTATGACTCTGTGGGAAAAGACACCTTTAAG                         GGATCGTTAGCATGTTTGAAGAGCCGAGGATACATGGGTGAGCTTTGGACA
genomic: GTAAAGGAGTAAATGTTGTTTATGACTCTGTGGGAAAAGACACCTTTAAGgtattgtcac ... aaatttccagGGATCGTTAGCATGTTTGAAGAGCCGAGGATACATGG-TGAGCTTTGGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttctttagctggtttttcggatttcttataatgaattttttataaatttccagGGATCGTTAGCATGTTTGAAGAGCCGAGGATACATGGTGAGCTTTGGACAATCCTCAGGATCTCCAGATCCGATTCCATTATCTGATCTTGCTCCAAAGT
                                                tttcc  CT-rich tract
              tttttcggatttctta  TA-rich tract