Sequence
atgc intronic sequence ATGC exonic sequencegtatttttcatcacatgtattataatcgttttagattgacataagatgatgcttcactgttttgttttgttatattcaatatttggttaggtactgtttcacttcttttttccacaggctttacaatactggattctgttttccttacagGGAAGTAGGCTTGGGATTACAACGGTGGTCTCAACCGACTCAATCCGTCACATGATGAGGAGTTTCGTTGATGAAAAGCAGAATCCTTTGCTATGGGCTT
Basic information
species | Arabidopsis thaliana |
transcript | AT5G60760.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G60760.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: EFJ30825 (Selaginella moellendorffii), 3'ss of exon 2
gtatttttcatcacatgtattataatcgttttagattgacataagatgatgcttcactgttttgttttgttatattcaatatttggttaggtactgtttcacttcttttttccacaggctt-tacaatactggattctgttttccttacagGGAAGTAGGCTTGGGATTACAACGGTGGTCTCAACCGACTCAATCCGTCACATGATGAGGAGTTTCGTTGATGAAAAGCAGAATCCTTTGCTATGGGCTT
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--------------------------------------------------------------------------------------gtaagt-cagatcgatgacgtagttctctggatttataccctggttg-ttctgttttcc---cagGCTAGCCGACTGGGAATAACGACAGTGGTGTCCACGGACTCAATTCGTCACATGATGAGGAGTTTTGCGGACGAGAAGTCGAATCCTCTTTTATGGGCCT
upper sequence: AT5G60760.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: EFJ22815 (Selaginella moellendorffii), 3'ss of exon 3
gtatttttcatcacatgtattataatcgttttagattgacataagatgatgcttcactgttttgttttgttatattcaatatttggttaggtactgtttcacttcttttttccacaggctttacaatactggattctgttttccttacagGGAAGTAGGCTTGGGATTACAACGGTGGTCTCAACCGACTCAATCCGTCACATGATGAGGAGTTTCGTTGATGAAAAGCAGAATCCTTTGCTATGGGCTT
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--------------------------------------------------------------------------------------gtaagt-cagatcgatgacgtagttctctggattt---attccctggttgttctgttttcccagGCTAGCCGGCTGGGAATAACGACAGTGGTGTCCACGGACTCAATTCGTCACATGATGAGGAGTTTTGCGGACGAGAAGTCCAATCCTCTTTTATGGGCCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttcacttcttttttccacaggctttacaatactggattctgttttccttacagGGAAGTAGGCTTGGGATTACAACGGTGGTCTCAACCGACTCAATCCGTCACATGATGAGGAGTTTCGTTGATGAAAAGCAGAATCCTTTGCTATGGGCTT
ttctgttttccttac CT-rich tract
ttctttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatttttcatcacatgtattataatcgttttagattgacataagatgatgcttcactgttttgttttgttatattcaatatttggttaggtactgtttcacttcttttttccacaggctttacaatactggattctgttttccttacagGGAAGTAGGCTTGGGATTACAACGGTGGTCTCAACCGACTCAATCCGTCACATGATGAGGAGTTTCGTTGATGAAAAGCAGAATCCTTTGCTATGGGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG