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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagagactttttacgcctaaacctctgttagatcttgtagctagctttctctttgttgttttaactagatcttgtaaatttaatttgcagGTAGTAGAAAAGGTCAAGGGGCATCCTTTGTGGCAAGCGACTCCCATG

Basic information

species Arabidopsis thaliana
transcript AT5G59430.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124798599|gb|EH888278.1|EH888278
EST:     ATCTGATTCCGTTACTGATGATTACCGTATGCGTACTAAGATGCATAGAG                         GTAGTAGAAAAGGTCAAGGGG
genomic: ATCTGATTCCGTTACTGATGATTACCGTATGCGTACTAAGATGCATAGAGgtaaagagac ... taatttgcagGTAGTAGAAAAGGTCAAGGGG
EST: gi|86037146|gb|DR332901.1|DR332901
EST:     ATCTGATTCCGTTACTGATGATTACCGTATGCGTACTAAGATGCATAGAG                         GTAGTAGAAAAGGTCAWGGGGCATCCTTTGTGGCAAGCGACTCCCATG
genomic: ATCTGATTCCGTTACTGATGATTACCGTATGCGTACTAAGATGCATAGAGgtaaagagac ... taatttgcagGTAGTAGAAAAGGTCAAGGGGCATCCTTTGTGGCAAGCGACTCCCATG
EST: gi|86079249|gb|DR375006.1|DR375006
EST:     ATCTGATTCCGTTACTGATGATTACCGTATGCGTACTAAGATGCATAGAG                         GTAGTAGAAAAGGTCAAGGGGCATCCTTTGTGGCAAGCGACTCCCATG
genomic: ATCTGATTCCGTTACTGATGATTACCGTATGCGTACTAAGATGCATAGAGgtaaagagac ... taatttgcagGTAGTAGAAAAGGTCAAGGGGCATCCTTTGTGGCAAGCGACTCCCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtagctagctttctctttgttgttttaactagatcttgtaaatttaatttgcagGTAGTAGAAAAGGTCAAGGGGCATCCTTTGTGGCAAGCGACTCCCATG
                       ttttaactagatcttg  TA-rich tract