1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagttaattactacaagcacttaaataactagttaaagagatatgaaaccaaatgttttctcaaaagaaagttttgactgatatcttagtttctgtcttattgattggtttttccttgtgtagGTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAG
species | Arabidopsis thaliana |
transcript | AT5G58290.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATTGAGTTCCCCCTTCCTGATAGACGTCAAAAGAGGCTTGTTTTCCAG GTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTGACTTGGAAGACTATEST: gi|124941400|gb|EL017755.1|EL017755
genomic: AGATTGAGTTCCCCCTTCCTGATAGACGTCAAAAGAGGCTTGTTTTCCAGgtaagttaat ... ccttgtgtagGTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTGACTTGGAAGACTAT
EST: AGATTGAGTTCCCCCTTCCTGATAGACGTCAAAAGAGGCTTGTTTTCCAG GTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTGAEST: gi|86084279|gb|DR380038.1|DR380038
genomic: AGATTGAGTTCCCCCTTCCTGATAGACGTCAAAAGAGGCTTGTTTTCCAGgtaagttaat ... ccttgtgtagGTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTGA
EST: AGATTGAGTTCCCCCTTCCTGATAGACGTCAAAAGAGGCTTGTTTTCCAG GTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTGACTTGGAAGACTAT
genomic: AGATTGAGTTCCCCCTTCCTGATAGACGTCAAAAGAGGCTTGTTTTCCAGgtaagttaat ... ccttgtgtagGTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTGACTTGGAAGACTAT
aagttttgactgatatcttagtttctgtcttattgattggtttttccttgtgtagGTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAG
tattgat putative branch site (score: 3)
tttttccttgt putative PPT
ttattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttaattactacaagcacttaaataactagttaaagagatatgaaaccaaatgttttctcaaaagaaagttttgactgatatcttagtttctgtcttattgattggtttttccttgtgtagGTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTGACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT