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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagcttgtctgaccacttggtgctttctcatgatcattgttttttttctcattttgaataattggcagttgctcattcatatttggatttcactattcattcgtctctaaaaacactcgacgtaattaatatgtatctttcagATATCTATGGTATCAGGTATACTGGCATACAAGTTTGGAGCTGCTTTTGCCTGGATTACTTCTCTCTCCGTTGGATCATATATCGTTTTCACATTAGCTG

Basic information

species Arabidopsis thaliana
transcript AT5G58270.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58270.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA14G38800.1 (Glycine max), 3'ss of exon 5
gtaaagcttgtctgaccacttggtgctttctcatgatcattgttttttttctcattttgaataattggcagttgctcattcatatttggatttcactattcattcgtctctaaaaacactcgacgtaattaatatgtatct-ttcagATATCTATGGTATCAGGTATACTGGCATACAAGTTTGGAGCTGCTTTTGCCTGGATTACTTCTCTCTCCGTTGGATCATATATCGTTTTCACATTAGCTG
                                            |||||| | ||     ||  |||  |  |  |   ||||        ||   |  || ||  | |  || |||  ||  |  | |||| |||||||  | ||||||||||||||| ||||||||||||| ||||| ||||||||| | |||||   |||||||||  | || ||||   | ||| | | ||| ||| |  || 
------------------------------------------gattttttttaat----gatctttgaaaactattttgtcatcccaactcttgcttgctctttttttttgaacaac-ttcagcagatttaacatgtatccatccagATATCTATGGTAGCAGGTATACTGGCCTACAAATTTGGAGCTCCCTTTGCACTGATTACTTCCTTATCAGTTGCTGCTTATGTTGCTTTTACACTGACTA

upper sequence: AT5G58270.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G40490.1 (Glycine max), 3'ss of exon 5
gtaaagcttgtctgaccacttggtgctttctcatgatcattgttttttttctcattttgaataattggcagttgctcattcatatttggatttcactattcattcgtctctaaaaacactcgacgtaattaatatgtatct-ttcagATATCTATGGTATCAGGTATACTGGCATACAAGTTTGGAGCTGCTTTTGCCTGGATTACTTCTCTCTCCGTTGGATCATATATCGTTTTCACATTAGCTG
                                         | ||||||| | | |    ||  |||  | ||  |   ||||       | |  ||  || ||  | | | ||     ||  |  | |||| |||||||  | ||||||||||||||| |||||||| |||| ||||| ||||||||| | |||||   |||||||||  | || ||||   | ||| |   ||| ||| |  || 
-----------------------------------------gattttttttttaat---gatctttgaaatttattttgtcat-cccaactcttgct--tcctttttttttgaactacttcagcagatttaacatgtatccatccagATATCTATGGTAGCAGGTATATTGGCCTACAAATTTGGAGCTCCCTTTGCGCTGATTACTTCCTTATCTGTTGCTGCCTATGTTACTTTTACACTGACTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcactattcattcgtctctaaaaacactcgacgtaattaatatgtatctttcagATATCTATGGTATCAGGTATACTGGCATACAAGTTTGGAGCTGCTTTTGCCTGGATTACTTCTCTCTCCGTTGGATCATATATCGTTTTCACATTAGCTG
                                   aattaat  putative branch site (score: 3)
                                             tatctttc  putative PPT
                                  taattaatatgtatct  TA-rich tract