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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattatgtttaatatttagtatgtcatagtgtctgatttctttttttgtcacagtaggattactttctctatggttgaaattactgaatatgatgagaaactctaatcttgcagATTGAACACCGGCGAGCCTACAATTGTGAAATCATGCTTTCAAAAGTGAAAGTACCTTTACAGGATTTGACG

Basic information

species Arabidopsis thaliana
transcript AT5G58160.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58160.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA17G08230.1 (Glycine max), 3'ss of exon 8
gtaaattatgtttaatattta-gtatgtcatagtgtc--tgatttctttttttgtcacagtaggattactttctctatggttgaaattactgaatatgatgagaaactctaatcttgcagATTGAACACCGGCGAGCCTACAATTGTGAAATCATGCTTTCAAAAGTGAAAGTACCTTTACAGGATTTGACG
    || || |||    || |  ||| |  | ||| |  |||     ||  | | ||    | ||||||  ||  | || |||| | || |                ||    |||||||||||| ||  ||||||| || |||||||||||||||||||||||||||||||| || || || ||||| | |
----atcatttttctcgttgacatatatt-tggtggccgtgacactattactggccatgacatgattaccatccttttgattgatactatta---------------tcactccttgcagATTGAGCATAGGCGAGCATATAATTGTGAAATCATGCTTTCAAAAGTGAAAGTGCCATTGCATGATTTAATG

upper sequence: AT5G58160.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G36440.1 (Glycine max), 3'ss of exon 10
gtaaattatgtttaatatttagtatgtcatagtgtctgatttctttttttgtcacagtaggattactttctctatggttgaaattactgaatatgatgagaaactctaatcttgcagATTGAACACCGGCGAGCCTACAATTGTGAAATCATGCTTTCAAAAGTGAAAGTACCTTTACAGGATTTGACG
  | ||| | ||||  ||||      |     | | |      ||  |    ||    |  |||||  ||  | || ||   |||  | ||||| || |    |||    | |||||||||| ||  ||||||| || |||||||||||||||||||||||||||||||| || || || ||||| | |
--agattctatttatcatttttctcattgatatatat------ttggtggcccatgacacaattaccatccttttgattttgattgat-aatattatca----ctc----cctgcagATTGAGCATAGGCGAGCATATAATTGTGAAATCATGCTTTCAAAAGTGAAAGTGCCGTTGCATGATTTAATG

upper sequence: AT5G58160.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv11s0016g00160.t01 (Vitis vinifera), 3'ss of exon 5
gtaaattatgtttaatatttagtatgtcatagtgtctgatttctttttttgtcacagtag----gattactttctctatggttgaaattactgaatatgatgagaaactctaatcttgcagATTGAACACCGGCGAGCCTACAATTGTGAAATCATGCTTTCAAAAGTGAAAGTACCTTTACAGGATTTGACG
                  |   | |  | |  | |||| ||| |||  |    | |||      || |  ||  ||| |  ||   || |    |  |  | |  | | ||  || || ||||||||||| || |||||||||||||||||||||||||||| || ||||| || || || || || || | |
------------------tggttgtacccttatttctgttttgtttgatatgaaaagttcttttgagtgtttaatct-tatttatcatcatcttactttgtcattatcact--tcatgtagATTGAACACAGGAGAGCCTACAATTGTGAAATCATGCTTTCGAAGGTGAAGGTGCCATTGCATGAATTAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttactttctctatggttgaaattactgaatatgatgagaaactctaatcttgcagATTGAACACCGGCGAGCCTACAATTGTGAAATCATGCTTTCAAAAGTGAAAGTACCTTTACAGGATTTGACG
                                         ctctaat  putative branch site (score: 3)
                  aaattactgaatat  TA-rich tract