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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaattttgtttttcttccttctttcaatttgctttgcattgcattgtggttaattgaaattgttctttgaggattagtattggtctggagattgtagcagttttatctactttgattttgcggaagaatgtttccttgtggtttatgtgcatttcccttactgtgtgtagACAGCAATCGGATATAGCTAGACTTGAAGCTAAAGTTGAGAGGCTTGAAGCGCTACTCCAACAGAAGGACAGAGAAATTGCAACAATTACCAGAACC

Basic information

species Arabidopsis thaliana
transcript AT5G57410.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86047425|gb|DR343180.1|DR343180
EST:     CGACAACGTGATATAGAGTTTAGAGAATCTGCTAATGAGCTGAGACAGAG                         ACAGCAATCGGATATAGCTAGACTTGAAGCTAAAGTTGAGAGGCTTGAAGC
genomic: CGACAACGTGATATAGAGTTTAGAGAATCTGCTAATGAGCTGAGACAGAGgtgaattttg ... ctgtgtgtagACAGCAATCGGATATAGCTAGACTTGAAGCTAAAGTTGAGAGGCTTGAAGC
EST: gi|164144444|gb|ES120373.1|ES120373
EST:     GTGATATAGAGTTTAGAGAATCTGCTAATGAGCTGAGACAGAG                         ACAGCAATCGGAATATAGCTAGACTTGAAGCTAAAGTTGAGAGGC
genomic: GTGATATAGAGTTTAGAGAATCTGCTAATGAGCTGAGACAGAGgtgaattttg ... ctgtgtgtagACAGCAATCGGA-TATAGCTAGACTTGAAGCTAAAGTTGAGAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgcggaagaatgtttccttgtggtttatgtgcatttcccttactgtgtgtagACAGCAATCGGATATAGCTAGACTTGAAGCTAAAGTTGAGAGGCTTGAAGCGCTACTCCAACAGAAGGACAGAGAAATTGCAACAATTACCAGAACC
                                       cccttac  putative branch site (score: 3)
                                    tttcccttact  CT-rich tract
           aatgttt  TA-rich tract