Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtctagtgcgttatataacccctgtctctattatgcttccaacaatttggtggctctctcggggtttctaaatgtaacttggtagttttttaatcataatgtagaccttccctgtgctagtattgctgatggaaccatagttttatgtgaagctgatcatagttaagactaaattatgtttgcttctttgttacagTTGAGGAATTTGGTCTGGGCTACCTCAAAACACGATGTTTATTTATTGTCCAACTACTCCATCAGCCACTGGTCTTCTTTGACAGGTTGTAGGAGTGAAA

Basic information

species Arabidopsis thaliana
transcript AT5G56190.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G56190.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv19s0015g01750.t01 (Vitis vinifera), 3'ss of exon 3
gtttgtctagtgcgttatataacccctgtctctattatgcttccaacaatttggtggctctctcggggtttctaaatgtaacttggtagttttttaatcataatgtagaccttccctgtgctagtattgctgatggaaccatagttttatgtgaagctgatcatagttaagactaaattatgtttgcttctttgttacagTTGAGGAATTTGGTCTGGGCTACCTCAAAACACGATGTTTATTTATTGTCCAACTACTCCATCAGCCACTGGTCTTCTTTGACAGGTTGTAGGAGTGAAA
                                                                                               | | ||| |  |  |  |   | || || | ||  |     || |  | | ||  |  ||  || |  | |    ||   |   ||      ||  |||   ||||||||||| || ||||||||||| |||||||| ||||| ||| |  ||||  | | |||  |||  || |||||||| |||||  |    | |  |||| 
-----------------------------------------------------------------------------------------------attgatactaaatgcagtttat-tgttaattttttt----caatctgactatttggataatttggtttttgagctgatatagacatacgctgtttgttgaggcagTTGAGGAACTTAGTCTGGGCTACATCAAAACATGATGTATATCTTATGTCGCATTTCTCTGTCATTCATTGGTCTTCATTGACTTGCAACATGTCTGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgtgaagctgatcatagttaagactaaattatgtttgcttctttgttacagTTGAGGAATTTGGTCTGGGCTACCTCAAAACACGATGTTTATTTATTGTCCAACTACTCCATCAGCCACTGGTCTTCTTTGACAGGTTGTAGGAGTGAAA
                         gactaaa  putative branch site (score: 2)
                                     tttgcttctttgtt  putative PPT
                     ttaagactaaattat  TA-rich tract