Sequence
atgc intronic sequence ATGC exonic sequencegtaaggagttgttgcttttaggagtctattttcctttgctgattatctgagaactgaactcagaattcttttaacgcagGTGAGTCCGATTGAGTATGGGCATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTACCTCAAAGGATTGATCACAAAAGCCTTTTGCTTGCTCTTCAAA
Basic information
| species | Arabidopsis thaliana |
| transcript | AT5G55120.1 |
| intron # | 4 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G55120.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA18G10430.1 (Glycine max), 3'ss of exon 4
-gtaaggagttgttgct----tttaggagtctatt--ttcctttgctgattatctgagaactgaactcagaattcttttaacgcagGTGAGTCCGATTGAGTATGGGCATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTACCTCAAAGGATTGATCACAAAAGCCTTTTGCTTGCTCTTCAAA
||||| | || | ||||| | | | | || |||| ||| | | || | | |||| | ||||||||||| ||||| |||||||||||| |||||||||| || || |||| || ||||||||||||||||| || |||| | |||||||| ||||||
tgtaagtttcttttaaaaaagtcctccagtctgtcagtaaaataggtgtttatatgatacttttccttgtaccttttttta-acaGGTGAGTCCTATTGAATATGGGCATGTGCTGCTGATTCCACGGATTTTTGAGTGTTTACCTCAAAGGATTGACCATGCAAGCTTCTTGCTTGCACTTCAA-
upper sequence: AT5G55120.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA08G43200.1 (Glycine max), 3'ss of exon 5
--------------------gtaaggagttgttgcttttaggagtctattttcctttgctgattatctgagaactgaactcagaattcttttaacgcagGTGAGTCCGATTGAGTATGGGCATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTACCTCAAAGGATTGATCACAAAAGCCTTTTGCTTGCTCTTCAAA
||| ||| || | || | | | || |||| ||| | || || | | |||| ||||||||||| ||||| |||||||||||| |||||||||| | || |||| || ||||||||||||||||| || |||| | |||||||| |||||||
gtaagtttcttgaatttttttcctccagtctttgtcattgagggttagtaaaa--taggtgtttatatgata-cttttctgtgtacctttttttaacagGTGAGTCCTATTGAATATGGGCATGTGCTGCTGATTCCACAGATTTTTGAGTGTTTACCTCAAAGGATTGACCATGCAAGCTTCTTGCTTGCACTTCAAA
upper sequence: AT5G55120.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA02G46230.1 (Glycine max), 3'ss of exon 4
-----gtaaggagttgttgcttttaggagtctattttc-----ctttgc-tgattatc--tgagaactgaactcagaattcttttaacgcagGTGAGTCCGATTGAGTATGGGCATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTACCTCAAAGGATTGATCACAAAAGCCTTTTGCTTGCTCTTCAAA
| | || | ||| | || | || ||| | ||| |||| | ||| | || || || | ||||| |||| ||||| ||||||||||||||||| ||||||||||| || | |||| || || |||||||||||||| | | ||| | | ||||| ||||| |
gtatagacaatagcttttgttcttgtgggttcattattaggcgttttatgtgatgactgatgatatttgtttcttgatttatcttaac--agGTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATATTTGAGTGTTTGCCTCAAAGGATTGACCGTGAGAGCTTCCTCCTTGCACTTCAGA
upper sequence: AT5G55120.1 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA14G02500.1 (Glycine max), 3'ss of exon 4
-----gtaaggagttgttgcttttaggagtctattttcctttgctgattatctgagaactgaactcagaattcttttaac--------------gcagGTGAGTCCGATTGAGTATGGGCATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTACCTCAAAGGATTGATCACAAAAGCCTTTTGCTTGCTCTTCAAA
| | || | ||| | || | || ||| | | | |||| ||| ||||| || ||| ||||| ||||| ||||||||||||||||| ||||||||||| || || | || || || |||||||||||||| | | ||| | | ||||| ||||| |
gtatagacactagcttttgttcttgtgggttcattgttaggcgtt--ttatgtgatgactgatgatgatgtttgtttgtttatcgattttcgtaacagGTCAGTCCTATTGAGTATGGGCATGTTTTGCTGATTCCGCGCATTTTCGAGTGTTTGCCTCAAAGGATTGACCGTGAGAGCTTCCTCCTTGCACTTCACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|47828624|gb|CK118308.1|CK118308EST: CGAGTATGCCTCTAGACGCTGATAATTCTCCTAGCGTCGTTGCAATCAAT GTGAGTCCGATTGAGTATGGGCATGTGTTGCTGATTCCTCGTGTTCTTGAT
genomic: CGAGTATGCCTCTAGACGCTGATAATTCTCCTAGCGTCGTTGCAATCAATgtaaggagtt ... tttaacgcagGTGAGTCCGATTGAGTATGGGCATGTGTTGCTGATTCCTCGTGTTCTTGAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tctattttcctttgctgattatctgagaactgaactcagaattcttttaacgcagGTGAGTCCGATTGAGTATGGGCATGTGTTGCTGATTCCTCGTGTTCTTGATTGCTTACCTCAAAGGATTGATCACAAAAGCCTTTTGCTTGCTCTTCAAA
ttttaac putative branch site (score: 2)
ttctttt CT-rich tract
aattcttttaa TA-rich tract
