1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtttttgtttttcatttctcacaatatagttcttgatgaatgaatacactttcaaatcgttttaacttcgggcttctctttctttcagGTTGCATCTTTCATGACTGTTTGGAGCCAAATGCAGCCTGAGTATGCTGCTAACATGTGGAATGAAGCCTTGAACAAGCGACTGGGAACAGAG
species | Arabidopsis thaliana |
transcript | AT5G54870.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGATTGATACCGTTAGTGAAAACTACCCGCCTCCTCTAGATGCCCATCTT GTTGCATCTTTCATGACTGTTTGGAGCCAAATGCAGCCTGAGTATGCTGCTEST: gi|86059002|gb|DR354759.1|DR354759
genomic: GGATTGATACCGTTAGTGAAAACTACCCGCCTCCTCTAGATGCCCATCTTgtaagttttt ... tttctttcagGTTGCATCTTTCATGACTGTTTGGAGCCAAATGCAGCCTGAGTATGCTGCT
EST: GGATTGATACCGTTAGTGAAAACTACCCGCCTCCTCTAGATGCCCATCTT GTTGCATCTTTCATGACTGTTTGGAGCCAAATGCAGCCTGAGTATGCTGCTEST: gi|86059000|gb|DR354757.1|DR354757
genomic: GGATTGATACCGTTAGTGAAAACTACCCGCCTCCTCTAGATGCCCATCTTgtaagttttt ... tttctttcagGTTGCATCTTTCATGACTGTTTGGAGCCAAATGCAGCCTGAGTATGCTGCT
EST: GGATTGATACCGTTAGTGAAAACTACCCGCCTCCTCTAGATGCCCATCTT GTTGCATCTTTCATGACTGTTTGGAGCCAAATGCAGCCTGAGTATGCTGCT
genomic: GGATTGATACCGTTAGTGAAAACTACCCGCCTCCTCTAGATGCCCATCTTgtaagttttt ... tttctttcagGTTGCATCTTTCATGACTGTTTGGAGCCAAATGCAGCCTGAGTATGCTGCT
tgatgaatgaatacactttcaaatcgttttaacttcgggcttctctttctttcagGTTGCATCTTTCATGACTGTTTGGAGCCAAATGCAGCCTGAGTATGCTGCTAACATGTGGAATGAAGCCTTGAACAAGCGACTGGGAACAGAG
ttttaac putative branch site (score: 2)
cttcgggcttctcttt CT-rich tract
ttttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttgtttttcatttctcacaatatagttcttgatgaatgaatacactttcaaatcgttttaacttcgggcttctctttctttcagGTTGCATCTTTCATGACTGTTTGGAGCCAAATGCAGCCTGAGTATGCTGCTAACATGTGGAATGAAGCCTTGAACAAGCGACTGGGAACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC