Sequence
atgc intronic sequence ATGC exonic sequencegcaagaatatataacccttttcaaaaataaacatatgagatatcaattgataatttgcatgttatttttgtttaacacgtgaattgatttttattttttgtttgcatatggtttggattggattttgagaatggtgcagGAAGTAGAAGAAGTGGGAGGAAAAGAAGAGTTGGAGAAAGAGATAAGCCGGAGAATCAAATTATACAACAAGGGTTCTTCTACCTCTTAATTGCTACAAA
Basic information
species | Arabidopsis thaliana |
transcript | AT5G52570.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G52570.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA10G37560.2 (Glycine max), 3'ss of exon 5
gcaagaatatataacccttttcaaaaataaacatatgagatatcaattgataatttgcatgttatt-tttgtttaacacgtgaattgatttttattttttgtttgcatatggtttggattggattttgagaatggtgcagGAAGTAGAAGAAGTGGGAGGAAAAGAAGAGTTGGAGAAAGAGATAAGCCGGAGAATCAAATTATACAACAAGGGTTCTTCTACCTCTTAATTGCTACAAA--
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-------------------------------------aaat-ttatttcttttttttttcattggtatttacttcactagaggtttgcatatatttcttccagtgctaataccctttatgcgatc--aattatggtacagGAAGTTGAAGAAGTGGGAGGGCTAGAAGAGCTAGAGAAAGAGATAAGTAGGAGAATCAGGTCCGGT--TCATGACCATGCCAAGCTAGAGTTGTTTGAAAGA
upper sequence: AT5G52570.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv16s0050g01090.t01 (Vitis vinifera), 3'ss of exon 6
gcaagaatatataacccttttcaaaaataaacatatgagatatcaattgataatttgcatgttatttttgtttaacacgtgaattgatttttattttttgtttgcatatggtttggattggattttgagaatggtgcagGAAGTAGAAGAAGTGGGAGGAAAAGAAGAGTTGGAGAAAGAGATAAGCCGGAGAATCAAATTATACAACAAGGGTTCTTCTACCTCTTAATTGCTACAAA----
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-------------------------------------------------gtaagcccatcaccattttattttttcccc--aattaattttcaaa----atttgaagggggattgaatactatgtggtg--tggtgcagGAAGTGGAAGAGGTGGGAGGCAAGGATGAGTTGGAGAAAGAGATCAATCGCAGAGCCAGATTATCCAACGG----TCCAAGATGAATAGGATGTTTTAGATACGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86078127|gb|DR373884.1|DR373884EST: ACACAGACAAATTCAAAGGTGTACCATATGGGCTGTTTCTTGGACCAAAG GAAGTAGAAGAAGTGGGAGGAAAAGAAGAGTTGGAGAAAGAGATAAGCCGG
genomic: ACACAGACAAATTCAAAGGTGTACCATATGGGCTGTTTCTTGGACCAAAGgcaagaatat ... aatggtgcagGAAGTAGAAGAAGTGGGAGGAAAAGAAGAGTTGGAGAAAGAGATAAGCCGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgatttttattttttgtttgcatatggtttggattggattttgagaatggtgcagGAAGTAGAAGAAGTGGGAGGAAAAGAAGAGTTGGAGAAAGAGATAAGCCGGAGAATCAAATTATACAACAAGGGTTCTTCTACCTCTTAATTGCTACAAA
aattgat putative branch site (score: 4)
tttattttttgttt TA-rich tract